RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 COL1A1P02452 1464 aaPredicted RBP12.72□□□□□ -0.37
SF3A3-204ENST00000462258 FOXN1O15353 648 aa12.72□□□□□ -0.37
SF3A3-204ENST00000462258 TRIM27P14373 513 aa12.72□□□□□ -0.37
SF3A3-204ENST00000462258 HIBADHP31937 336 aaKnown RBP12.72□□□□□ -0.37
SF3A3-204ENST00000462258 RFX5P48382 616 aaPredicted RBP12.72□□□□□ -0.37
SF3A3-204ENST00000462258 FKBP1AP62942 108 aaKnown RBP12.72□□□□□ -0.37
SF3A3-204ENST00000462258 FRAT1Q92837 279 aaPredicted RBP12.72□□□□□ -0.37
SF3A3-204ENST00000462258 FAM205AQ6ZU69 1335 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 F8W031 263 aaPredicted RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 EYA2O00167 538 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 IPO8O15397 1037 aaKnown RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 AOC2O75106 756 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 BCAR3O75815 825 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 PDE8BO95263 885 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 MAP2K1Q02750 393 aaPredicted RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 PTPN12Q05209 780 aaKnown RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 PUM3Q15397 648 aaKnown RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 COL13A1Q5TAT6 717 aaPredicted RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 INTS3Q68E01 1043 aaKnown RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 ATF7IPQ6VMQ6 1270 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 VPS37DQ86XT2 251 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 C2orf69Q8N8R5 385 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 TDRD7Q8NHU6 1098 aaKnown RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 FAM84BQ96KN1 310 aaPredicted RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 WBP1LQ9NX94 342 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 SCAF8Q9UPN6 1271 aaKnown RBP12.71□□□□□ -0.37
SF3A3-204ENST00000462258 HDAC5Q9UQL6 1122 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 TNNQ9UQP3 1299 aa12.71□□□□□ -0.37
SF3A3-204ENST00000462258 GNAI3P08754 354 aa12.7□□□□□ -0.38
SF3A3-204ENST00000462258 CAVIN4Q5BKX8 364 aa12.7□□□□□ -0.38
SF3A3-204ENST00000462258 MFSD14BQ5SR56 506 aa12.7□□□□□ -0.38
SF3A3-204ENST00000462258 APOBEC3FQ8IUX4 373 aaKnown RBP12.7□□□□□ -0.38
SF3A3-204ENST00000462258 ZBED3Q96IU2 234 aaPredicted RBP12.7□□□□□ -0.38
SF3A3-204ENST00000462258 SIL1Q9H173 461 aa12.7□□□□□ -0.38
SF3A3-204ENST00000462258 MAP2K2P36507 400 aa12.69□□□□□ -0.38
SF3A3-204ENST00000462258 CTCFP49711 727 aaPredicted RBP12.69□□□□□ -0.38
SF3A3-204ENST00000462258 DLGAP5Q15398 846 aa12.69□□□□□ -0.38
SF3A3-204ENST00000462258 RGMBQ6NW40 437 aa12.69□□□□□ -0.38
SF3A3-204ENST00000462258 MTMR14Q8NCE2 650 aa12.69□□□□□ -0.38
SF3A3-204ENST00000462258 FBXO3Q9UK99 471 aa12.69□□□□□ -0.38
SF3A3-204ENST00000462258 IQSEC3Q9UPP2 1182 aaPredicted RBP12.69□□□□□ -0.38
SF3A3-204ENST00000462258 OTOFQ9HC10 1997 aa12.69□□□□□ -0.38
SF3A3-204ENST00000462258 SPDYE2BA6NHP3 402 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 FRAT2O75474 233 aaPredicted RBP12.68□□□□□ -0.38
SF3A3-204ENST00000462258 CIAO1O76071 339 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 IFIT1P09914 478 aaKnown RBP12.68□□□□□ -0.38
SF3A3-204ENST00000462258 SPDYE6P0CI01 402 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 SLC5A1P13866 664 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 FGFR2P21802 821 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 FKBP1BP68106 108 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 CHAF1AQ13111 956 aaPredicted RBP12.68□□□□□ -0.38
SF3A3-204ENST00000462258 NOGQ13253 232 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 CFAP100Q494V2 611 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 IFFO2Q5TF58 517 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 ZKSCAN2Q63HK3 967 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 ATG9AQ7Z3C6 839 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 FBXO33Q7Z6M2 555 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 CLUAP1Q96AJ1 413 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 BEGAINQ9BUH8 593 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 PCDHAC2Q9Y5I4 1007 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 AKAP11Q9UKA4 1901 aa12.68□□□□□ -0.38
SF3A3-204ENST00000462258 MYO1BO43795 1136 aa12.67□□□□□ -0.38
SF3A3-204ENST00000462258 HSPA8P11142 646 aaKnown RBP12.67□□□□□ -0.38
SF3A3-204ENST00000462258 NF2P35240 595 aa12.67□□□□□ -0.38
SF3A3-204ENST00000462258 PRAMEF18Q5VWM3 479 aa12.67□□□□□ -0.38
SF3A3-204ENST00000462258 LPIN2Q92539 896 aa12.67□□□□□ -0.38
SF3A3-204ENST00000462258 TTF2Q9UNY4 1162 aaKnown RBP12.67□□□□□ -0.38
SF3A3-204ENST00000462258 PA2G4Q9UQ80 394 aaKnown RBP12.67□□□□□ -0.38
SF3A3-204ENST00000462258 SSC5DA1L4H1 1573 aa12.67□□□□□ -0.38
SF3A3-204ENST00000462258 LAMB1P07942 1786 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 CLRN2A0PK11 232 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 SRGAP3O43295 1099 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 SLC10A3P09131 477 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 IL15P40933 162 aaPredicted RBP12.66□□□□□ -0.38
SF3A3-204ENST00000462258 BCAMP50895 628 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 ZNF157P51786 506 aaPredicted RBP12.66□□□□□ -0.38
SF3A3-204ENST00000462258 RBM5P52756 815 aaKnown RBP eCLIP12.66□□□□□ -0.38
SF3A3-204ENST00000462258 MTX1Q13505 466 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 ATP2B3Q16720 1220 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 FTSJ3Q8IY81 847 aaKnown RBP12.66□□□□□ -0.38
SF3A3-204ENST00000462258 TNS4Q8IZW8 715 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 TMEM57Q8N5G2 664 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 TBC1D22AQ8WUA7 517 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 VEZTQ9HBM0 779 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 COPRSQ9NQ92 184 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 PRDM10Q9NQV6 1147 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 SERPINA10Q9UK55 444 aa12.66□□□□□ -0.38
SF3A3-204ENST00000462258 AOX1Q06278 1338 aa12.65□□□□□ -0.38
SF3A3-204ENST00000462258 FAM155AB1AL88 458 aaPredicted RBP12.65□□□□□ -0.38
SF3A3-204ENST00000462258 GNAI2P04899 355 aa12.65□□□□□ -0.38
SF3A3-204ENST00000462258 LBX1P52954 281 aa12.65□□□□□ -0.38
SF3A3-204ENST00000462258 TTLL12Q14166 644 aaPredicted RBP12.65□□□□□ -0.38
SF3A3-204ENST00000462258 MOB2Q70IA6 237 aa12.65□□□□□ -0.38
SF3A3-204ENST00000462258 RASAL3Q86YV0 1011 aa12.65□□□□□ -0.38
SF3A3-204ENST00000462258 CCDC102AQ96A19 550 aa12.65□□□□□ -0.38
SF3A3-204ENST00000462258 PRMT6Q96LA8 375 aaPredicted RBP12.65□□□□□ -0.38
SF3A3-204ENST00000462258 CEP126Q9P2H0 1117 aa12.65□□□□□ -0.38
SF3A3-204ENST00000462258 PPP2R3BQ9Y5P8 575 aa12.65□□□□□ -0.38
SF3A3-204ENST00000462258 CRKP46108 304 aa12.64□□□□□ -0.39
SF3A3-204ENST00000462258 GRIK5Q16478 980 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms