RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 ITGB7P26010 798 aa8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 PIP4K2BP78356 416 aa8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 NKAPLQ5M9Q1 402 aa8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 PRPF40BQ6NWY9 871 aaKnown RBP8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 SND1Q7KZF4 910 aaKnown RBP eCLIP8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 WFDC12Q8WWY7 111 aa8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 KLHDC7BQ96G42 594 aa8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 LIN7BQ9HAP6 207 aa8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 ABCB6Q9NP58 842 aa8.35□□□□□ -1.07
HMGB1P13-201ENST00000406019 SOX1O00570 391 aaPredicted RBP8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 CDC25BP30305 580 aa8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 DOC2BQ14184 412 aa8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 RSPO4Q2I0M5 234 aaPredicted RBP8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 SPRED3Q2MJR0 410 aa8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 KLHL23Q8NBE8 558 aa8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 TMC1Q8TDI8 760 aa8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 EPS8L3Q8TE67 593 aaKnown RBP8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 NRSN2Q9GZP1 204 aa8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 MRPL18Q9H0U6 180 aaKnown RBP8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 OSGEPQ9NPF4 335 aa8.34□□□□□ -1.07
HMGB1P13-201ENST00000406019 DDX3YO15523 660 aaKnown RBP8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 ESRRAP11474 423 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 ITPKAP23677 461 aa8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 CD68P34810 354 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 PI16Q6UXB8 463 aa8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 KIAA1211Q6ZU35 1233 aa8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 MEGF10Q96KG7 1140 aa8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 SOX17Q9H6I2 414 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 SEC31BQ9NQW1 1179 aa8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 USP21Q9UK80 565 aa8.33□□□□□ -1.08
HMGB1P13-201ENST00000406019 A0A096LPE4 126 aa8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 A0A1W2PPZ6 126 aa8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 ADAM23O75077 832 aa8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 IREB2P48200 963 aaKnown RBP8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 GRM2Q14416 872 aa8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 CCDC27Q2M243 656 aa8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 DZIP1LQ8IYY4 767 aaKnown RBP8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 DCAF11Q8TEB1 546 aa8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 UBASH3BQ8TF42 649 aa8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 SETDB2Q96T68 719 aa8.32□□□□□ -1.08
HMGB1P13-201ENST00000406019 ALX3O95076 343 aa8.31□□□□□ -1.08
HMGB1P13-201ENST00000406019 FURINP09958 794 aa8.31□□□□□ -1.08
HMGB1P13-201ENST00000406019 SUZ12Q15022 739 aaKnown RBP8.31□□□□□ -1.08
HMGB1P13-201ENST00000406019 ZNF423Q2M1K9 1284 aa8.31□□□□□ -1.08
HMGB1P13-201ENST00000406019 ASAP3Q8TDY4 903 aa8.31□□□□□ -1.08
HMGB1P13-201ENST00000406019 ZNF576Q9H609 170 aa8.31□□□□□ -1.08
HMGB1P13-201ENST00000406019 AKTIPQ9H8T0 292 aa8.31□□□□□ -1.08
HMGB1P13-201ENST00000406019 PNMA6FA0A0J9YX94 578 aa8.3□□□□□ -1.08
HMGB1P13-201ENST00000406019 CABP4P57796 275 aa8.3□□□□□ -1.08
HMGB1P13-201ENST00000406019 PLCB3Q01970 1234 aa8.3□□□□□ -1.08
HMGB1P13-201ENST00000406019 IKBKEQ14164 716 aa8.3□□□□□ -1.08
HMGB1P13-201ENST00000406019 FAM117BQ6P1L5 589 aa8.3□□□□□ -1.08
HMGB1P13-201ENST00000406019 ZNF428Q96B54 188 aa8.3□□□□□ -1.08
HMGB1P13-201ENST00000406019 P4HBP07237 508 aaKnown RBP8.29□□□□□ -1.08
HMGB1P13-201ENST00000406019 PTPN12Q05209 780 aaKnown RBP8.29□□□□□ -1.08
HMGB1P13-201ENST00000406019 C19orf57Q0VDD7 668 aa8.29□□□□□ -1.08
HMGB1P13-201ENST00000406019 DNAJC14Q6Y2X3 702 aaPredicted RBP8.29□□□□□ -1.08
HMGB1P13-201ENST00000406019 ZSCAN29Q8IWY8 852 aaPredicted RBP8.29□□□□□ -1.08
HMGB1P13-201ENST00000406019 AGGF1Q8N302 714 aaeCLIP8.29□□□□□ -1.08
HMGB1P13-201ENST00000406019 CLEC4MQ9H2X3 399 aaPredicted RBP8.29□□□□□ -1.08
HMGB1P13-201ENST00000406019 DLGAP3O95886 979 aa8.28□□□□□ -1.08
HMGB1P13-201ENST00000406019 B3GALT4O96024 378 aa8.28□□□□□ -1.08
HMGB1P13-201ENST00000406019 PCDH1Q08174 1060 aa8.28□□□□□ -1.08
HMGB1P13-201ENST00000406019 EHD4Q9H223 541 aa8.28□□□□□ -1.08
HMGB1P13-201ENST00000406019 TMEM238LA0A1B0GVL6 79 aa8.27□□□□□ -1.09
HMGB1P13-201ENST00000406019 K7ELQ4 463 aaPredicted RBP8.27□□□□□ -1.09
HMGB1P13-201ENST00000406019 DYRK3O43781 588 aa8.27□□□□□ -1.09
HMGB1P13-201ENST00000406019 RBM25P49756 843 aaKnown RBP8.27□□□□□ -1.09
HMGB1P13-201ENST00000406019 ACAD11Q709F0 780 aa8.27□□□□□ -1.09
HMGB1P13-201ENST00000406019 SLC7A3Q8WY07 619 aa8.27□□□□□ -1.09
HMGB1P13-201ENST00000406019 UBL7Q96S82 380 aaPredicted RBP8.27□□□□□ -1.09
HMGB1P13-201ENST00000406019 TRIM56Q9BRZ2 755 aaKnown RBP8.27□□□□□ -1.09
HMGB1P13-201ENST00000406019 WWC3Q9ULE0 1092 aa8.27□□□□□ -1.09
HMGB1P13-201ENST00000406019 LOC100289279A0A1B0GTE1 492 aa8.26□□□□□ -1.09
HMGB1P13-201ENST00000406019 H2AFB1P0C5Y9 115 aa8.26□□□□□ -1.09
HMGB1P13-201ENST00000406019 H2AFB2P0C5Z0 115 aa8.26□□□□□ -1.09
HMGB1P13-201ENST00000406019 NLRP12P59046 1061 aa8.26□□□□□ -1.09
HMGB1P13-201ENST00000406019 FAAP100Q0VG06 881 aa8.26□□□□□ -1.09
HMGB1P13-201ENST00000406019 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.26□□□□□ -1.09
HMGB1P13-201ENST00000406019 FBF1Q8TES7 1133 aa8.26□□□□□ -1.09
HMGB1P13-201ENST00000406019 FAM177BA6PVY3 158 aa8.25□□□□□ -1.09
HMGB1P13-201ENST00000406019 GADD45BO75293 160 aaPredicted RBP8.25□□□□□ -1.09
HMGB1P13-201ENST00000406019 DUOXA2Q1HG44 320 aa8.25□□□□□ -1.09
HMGB1P13-201ENST00000406019 RPS26P11Q5JNZ5 115 aaPredicted RBP8.25□□□□□ -1.09
HMGB1P13-201ENST00000406019 C3orf58Q8NDZ4 430 aa8.25□□□□□ -1.09
HMGB1P13-201ENST00000406019 BCO2Q9BYV7 579 aa8.25□□□□□ -1.09
HMGB1P13-201ENST00000406019 MEGF11A6BM72 1044 aa8.24□□□□□ -1.09
HMGB1P13-201ENST00000406019 CTSBP07858 339 aa8.24□□□□□ -1.09
HMGB1P13-201ENST00000406019 COL19A1Q14993 1142 aa8.24□□□□□ -1.09
HMGB1P13-201ENST00000406019 NPAS4Q8IUM7 802 aa8.24□□□□□ -1.09
HMGB1P13-201ENST00000406019 ARMC10Q8N2F6 343 aa8.24□□□□□ -1.09
HMGB1P13-201ENST00000406019 FAM46AQ96IP4 442 aaKnown RBP8.24□□□□□ -1.09
HMGB1P13-201ENST00000406019 TMPRSS13Q9BYE2 586 aa8.24□□□□□ -1.09
HMGB1P13-201ENST00000406019 OSBPL7Q9BZF2 842 aa8.24□□□□□ -1.09
HMGB1P13-201ENST00000406019 TRAK1Q9UPV9 953 aa8.24□□□□□ -1.09
HMGB1P13-201ENST00000406019 MAPK8P45983 427 aa8.23□□□□□ -1.09
HMGB1P13-201ENST00000406019 TP53INP1Q96A56 240 aa8.23□□□□□ -1.09
HMGB1P13-201ENST00000406019 ANKRD33BA6NCL7 494 aa8.22□□□□□ -1.09
HMGB1P13-201ENST00000406019 ARL4DP49703 201 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms