RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C CLB4P24871 460 aa11.65□□□□□ -0.55
SPT8YLR055C GPI10P30777 616 aa11.65□□□□□ -0.55
SPT8YLR055C YEL1P34225 687 aa11.65□□□□□ -0.55
SPT8YLR055C END3P39013 349 aa11.65□□□□□ -0.55
SPT8YLR055C AXL1P40851 1208 aa11.65□□□□□ -0.55
SPT8YLR055C ERP6P53198 216 aa11.65□□□□□ -0.55
SPT8YLR055C RPL22BP56628 122 aaKnown RBP11.65□□□□□ -0.55
SPT8YLR055C UBP3Q01477 912 aaKnown RBP RIP-Chip data11.65□□□□□ -0.55not detected
SPT8YLR055C TRZ1P36159 838 aaPredicted RBP11.64□□□□□ -0.55
SPT8YLR055C SSP1P38871 571 aa11.64□□□□□ -0.55
SPT8YLR055C MDJ2P42834 146 aa11.64□□□□□ -0.55
SPT8YLR055C ZIP2P53061 704 aa11.64□□□□□ -0.55
SPT8YLR055C PIB1Q06651 286 aa11.64□□□□□ -0.55
SPT8YLR055C NOC3Q07896 663 aaPredicted RBP11.64□□□□□ -0.55
SPT8YLR055C SNF1P06782 633 aaKnown RBP11.63□□□□□ -0.55
SPT8YLR055C YMR085WP0CF18 432 aa11.63□□□□□ -0.55
SPT8YLR055C DBP5P20449 482 aaKnown RBP11.63□□□□□ -0.55
SPT8YLR055C OXP1P28273 1286 aa11.63□□□□□ -0.55
SPT8YLR055C SSE1P32589 693 aaKnown RBP11.63□□□□□ -0.55
SPT8YLR055C RAD54P32863 898 aa11.63□□□□□ -0.55
SPT8YLR055C SMY2P32909 740 aaKnown RBP11.63□□□□□ -0.55
SPT8YLR055C PTC3P34221 468 aaKnown RBP11.63□□□□□ -0.55
SPT8YLR055C PGM2P37012 569 aaKnown RBP11.63□□□□□ -0.55
SPT8YLR055C EAF5P39995 279 aa11.63□□□□□ -0.55
SPT8YLR055C UBP6P43593 499 aaKnown RBP11.63□□□□□ -0.55
SPT8YLR055C NNF2P53253 936 aa11.63□□□□□ -0.55
SPT8YLR055C SPT2P06843 333 aaPredicted RBP11.63□□□□□ -0.55
SPT8YLR055C PWP1P21304 576 aaKnown RBP11.63□□□□□ -0.55
SPT8YLR055C RME1P32338 300 aaKnown RBP11.63□□□□□ -0.55
SPT8YLR055C EXO5P38289 585 aa11.63□□□□□ -0.55
SPT8YLR055C VHC1P38329 1120 aa11.63□□□□□ -0.55
SPT8YLR055C MSG5P38590 489 aa11.63□□□□□ -0.55
SPT8YLR055C YNL040WP53960 456 aaPredicted RBP11.63□□□□□ -0.55
SPT8YLR055C ROD1Q02805 837 aa11.63□□□□□ -0.55
SPT8YLR055C YML020WQ03722 664 aa11.63□□□□□ -0.55
SPT8YLR055C COQ9Q05779 260 aa11.63□□□□□ -0.55
SPT8YLR055C PCK1P10963 549 aa11.62□□□□□ -0.55
SPT8YLR055C SCJ1P25303 377 aa11.62□□□□□ -0.55
SPT8YLR055C SEC21P32074 935 aaKnown RBP11.62□□□□□ -0.55
SPT8YLR055C CDC11P32458 415 aa11.62□□□□□ -0.55
SPT8YLR055C AVT1P47082 602 aa11.62□□□□□ -0.55
SPT8YLR055C ACF4P47129 309 aa11.62□□□□□ -0.55
SPT8YLR055C ARK1P53974 638 aa11.62□□□□□ -0.55
SPT8YLR055C BET4Q00618 327 aa11.62□□□□□ -0.55
SPT8YLR055C CHS2P14180 963 aa11.61□□□□□ -0.55
SPT8YLR055C EFT1P32324 842 aaKnown RBP11.61□□□□□ -0.55
SPT8YLR055C EMW1P42842 904 aaKnown RBP11.61□□□□□ -0.55
SPT8YLR055C PCL10P53124 433 aa11.61□□□□□ -0.55
SPT8YLR055C ILV2P07342 687 aaKnown RBP11.6□□□□□ -0.55
SPT8YLR055C AFT1P22149 690 aa11.6□□□□□ -0.55
SPT8YLR055C PUF4P25339 888 aaKnown RBP RIP-Chip data11.6□□□□□ -0.55 RIP-Chip
SPT8YLR055C CAP1P28495 268 aaKnown RBP11.6□□□□□ -0.55
SPT8YLR055C DPH5P32469 300 aaPredicted RBP11.6□□□□□ -0.55
SPT8YLR055C NCL1P38205 684 aaKnown RBP11.6□□□□□ -0.55
SPT8YLR055C ERC1P38767 581 aa11.6□□□□□ -0.55
SPT8YLR055C LCB2P40970 561 aa11.6□□□□□ -0.55
SPT8YLR055C REC107P21651 314 aa11.6□□□□□ -0.55
SPT8YLR055C DBF4P32325 704 aa11.6□□□□□ -0.55
SPT8YLR055C EFB1P32471 206 aaKnown RBP11.6□□□□□ -0.55
SPT8YLR055C TFC3P34111 1160 aa11.6□□□□□ -0.55
SPT8YLR055C YBR032WP38223 100 aa11.6□□□□□ -0.55
SPT8YLR055C GPN2Q08726 347 aaPredicted RBP11.6□□□□□ -0.55
SPT8YLR055C CDC33P07260 213 aaKnown RBP11.59□□□□□ -0.55
SPT8YLR055C CBF1P17106 351 aa11.59□□□□□ -0.55
SPT8YLR055C VMA4P22203 233 aaKnown RBP11.59□□□□□ -0.55
SPT8YLR055C KIP1P28742 1111 aa11.59□□□□□ -0.55
SPT8YLR055C RRN6P32786 894 aa11.59□□□□□ -0.55
SPT8YLR055C DUR3P33413 735 aa11.59□□□□□ -0.55
SPT8YLR055C YBL055CP34220 418 aaPredicted RBP11.59□□□□□ -0.55
SPT8YLR055C UBP13P38187 747 aa11.59□□□□□ -0.55
SPT8YLR055C HSM3P38348 480 aa11.59□□□□□ -0.55
SPT8YLR055C GUA1P38625 525 aaKnown RBP11.59□□□□□ -0.55
SPT8YLR055C HOS4P40480 1083 aa11.59□□□□□ -0.55
SPT8YLR055C SAD1P43589 448 aa11.59□□□□□ -0.55
SPT8YLR055C RLP24Q07915 199 aaKnown RBP11.59□□□□□ -0.55
SPT8YLR055C PHO8P11491 566 aa11.58□□□□□ -0.56
SPT8YLR055C COT1P32798 439 aa11.58□□□□□ -0.56
SPT8YLR055C ERP5P38819 212 aa11.58□□□□□ -0.56
SPT8YLR055C GCR1P07261 785 aa11.58□□□□□ -0.56
SPT8YLR055C HEM15P16622 393 aa11.58□□□□□ -0.56
SPT8YLR055C MRPL25P23369 157 aa11.58□□□□□ -0.56
SPT8YLR055C TPO2P53283 614 aa11.58□□□□□ -0.56
SPT8YLR055C RTT102P53330 157 aa11.58□□□□□ -0.56
SPT8YLR055C TIM8P57744 87 aa11.58□□□□□ -0.56
SPT8YLR055C ATG16Q03818 150 aa11.58□□□□□ -0.56
SPT8YLR055C ECM30Q06673 1274 aa11.58□□□□□ -0.56
SPT8YLR055C ABP140Q08641 628 aaKnown RBP11.58□□□□□ -0.56
SPT8YLR055C RIF1P29539 1916 aa11.57□□□□□ -0.56
SPT8YLR055C YSC83P32792 385 aa11.57□□□□□ -0.56
SPT8YLR055C AZR1P50080 613 aa11.57□□□□□ -0.56
SPT8YLR055C ATP25Q03153 612 aa11.57□□□□□ -0.56
SPT8YLR055C CUR1Q06469 252 aa11.57□□□□□ -0.56
SPT8YLR055C PUF3Q07807 879 aaKnown RBP RIP-Chip data11.57□□□□□ -0.56not detected
SPT8YLR055C IES4Q08561 116 aa11.57□□□□□ -0.56
SPT8YLR055C OSW2Q12202 724 aa11.57□□□□□ -0.56
SPT8YLR055C OCA6Q12454 224 aa11.57□□□□□ -0.56
SPT8YLR055C MLS1P30952 554 aa11.56□□□□□ -0.56
SPT8YLR055C MSS51P32335 436 aa11.56□□□□□ -0.56
SPT8YLR055C MRE11P32829 692 aa11.56□□□□□ -0.56
SPT8YLR055C CCL1P37366 393 aa11.56□□□□□ -0.56
Retrieved 100 of 5,963 RNA–protein pairs in 43.6 ms