RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	IMP2'	P32351	346 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	ABD1	P32783	436 aa	Predicted RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	BDF1	P35817	686 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	GGA2	P38817	585 aa	Known RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	SMC2	P38989	1170 aa	Known RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	YMR124W	P39523	943 aa	Known RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	SNL1	P40548	159 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	FOL1	P53848	824 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	HOT1	Q03213	719 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	GLO2	Q05584	274 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	NSE1	Q07913	336 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	THS1	P04801	734 aa	Known RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	YEL1	P34225	687 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	DUG2	P38149	878 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	PCA1	P38360	1216 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	YHR112C	P38716	378 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	SAK1	P38990	1142 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	MNN1	P39106	762 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	KTR5	P53966	522 aa	Predicted RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	RRP6	Q12149	733 aa	Known RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	SPE4	Q12455	300 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	RMD5	Q12508	421 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	SLH1	P53327	1967 aa	Known RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	HEM1	P09950	548 aa	Predicted RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	COX11	P19516	300 aa	Known RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	DAL1	P32375	460 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	TFC4	P33339	1025 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	MSG5	P38590	489 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	SET4	P42948	560 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	JJJ1	P53863	590 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	YKR005C	Q02203	525 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	GTB1	Q04924	702 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	PNP1	Q05788	311 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	ISA1	Q07821	250 aa	Predicted RBP	3.76	□□□□□ -1.81
SSM4	YIL030C	SDH5	Q08230	162 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	MET7	Q08645	548 aa		3.76	□□□□□ -1.81
SSM4	YIL030C	CLN1	P20437	546 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	RIT1	P23796	513 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	BIO2	P32451	375 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	PEP7	P32609	515 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	PTK1	P36002	662 aa	Predicted RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	GDT1	P38301	280 aa	Predicted RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	CCT2	P39076	527 aa	Known RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	RSP5	P39940	809 aa	Known RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	FIS1	P40515	155 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	SUM1	P46676	1062 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	RPC17	P47076	161 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	AZR1	P50080	613 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	BUD32	P53323	261 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	GTR1	Q00582	310 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	3.75	□□□□□ -1.81	not detected
SSM4	YIL030C	SMP3	Q04174	516 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	ECM7	Q06200	448 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	CLB4	P24871	460 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	SPT16	P32558	1035 aa	Known RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	RPT3	P33298	428 aa	Known RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	YGR111W	P53265	400 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	IST1	P53843	298 aa	Predicted RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	CBK1	P53894	756 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	RPM2	Q02773	1202 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	GAS3	Q03655	524 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	IMH1	Q06704	911 aa	Known RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	SEY1	Q99287	776 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	TOP1	P04786	769 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	ILS1	P09436	1072 aa	Known RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	STI1	P15705	589 aa	Known RBP RIP-Chip data	3.75	□□□□□ -1.81	not detected
SSM4	YIL030C	UBC6	P33296	250 aa	Predicted RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	STE13	P33894	931 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	RPC25	P35718	212 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	MCD4	P36051	919 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	SHC1	P39000	512 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	NPP2	P39997	493 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	INA22	P40576	216 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	YFR006W	P43590	535 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	ORC5	P50874	479 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	INP52	P50942	1183 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	SQS1	P53866	767 aa	Known RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	SLG1	P54867	378 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	SPO19	Q03029	223 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	RCF1	Q03713	159 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	NOC3	Q07896	663 aa	Predicted RBP	3.75	□□□□□ -1.81
SSM4	YIL030C	LOT6	Q07923	191 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	YOL036W	Q08206	761 aa		3.75	□□□□□ -1.81
SSM4	YIL030C	PBS2	P08018	668 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	VAN1	P23642	535 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	YHR033W	P38690	423 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	VHR2	P40041	505 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	APL6	P46682	809 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	TRF5	P48561	642 aa	Known RBP	3.74	□□□□□ -1.81
SSM4	YIL030C	UBP2	Q01476	1272 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	TVP15	Q03860	143 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	RPS9B	P05755	195 aa	Known RBP	3.74	□□□□□ -1.81
SSM4	YIL030C	MPH2	P0CD99	609 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	CHS3	P29465	1165 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	APE2	P32454	952 aa	Known RBP	3.74	□□□□□ -1.81
SSM4	YIL030C	AEP1	P32493	518 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	CSE1	P33307	960 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	SIP3	P38717	1229 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	FHL1	P39521	936 aa		3.74	□□□□□ -1.81
SSM4	YIL030C	RLP7	P40693	322 aa	Known RBP	3.74	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 17.9 ms