RNA–Protein interactions for RNA: YGL248W

PDE1, Transcript of Low-affinity cyclic AMP phosphodiesterase, yeast

Gene PDE1, Length 1,110 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PDE1	YGL248W	VPS45	P38932	577 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	RAD55	P38953	406 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	CCC2	P38995	1004 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	SAH1	P39954	449 aa	Known RBP	5.73	□□□□□ -1.49
PDE1	YGL248W	YEL068C	P39977	110 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	YJL068C	P40363	299 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	UBP7	P40453	1071 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	NEO1	P40527	1151 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	ZIM17	P42844	174 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	MNN11	P46985	422 aa	Known RBP	5.73	□□□□□ -1.49
PDE1	YGL248W	MDE1	P47095	244 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	RAD17	P48581	401 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	NCE103	P53615	221 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	CNM67	P53865	581 aa	Known RBP	5.73	□□□□□ -1.49
PDE1	YGL248W	ERV25	P54837	211 aa	Known RBP	5.73	□□□□□ -1.49
PDE1	YGL248W	CTR9	P89105	1077 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	ADA2	Q02336	434 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	COG8	Q04632	607 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	CIA1	Q05583	330 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	YLR225C	Q05948	407 aa	Known RBP	5.73	□□□□□ -1.49
PDE1	YGL248W	HIM1	Q06674	414 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	GUD1	Q07729	489 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	NFI1	Q12216	726 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	YLL054C	Q12244	843 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	5.73	□□□□□ -1.49	not detected
PDE1	YGL248W	HBN1	Q96VH4	193 aa		5.73	□□□□□ -1.49
PDE1	YGL248W	RAD18	P10862	487 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	CKA1	P15790	372 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.72	□□□□□ -1.49	not detected
PDE1	YGL248W	SFL1	P20134	766 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	MSB1	P21339	1137 aa	Known RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	SPB1	P25582	841 aa	Predicted RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	SEC21	P32074	935 aa	Known RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	EFB1	P32471	206 aa	Known RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	YKU70	P32807	602 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	MCD4	P36051	919 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	UIP5	P36137	443 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	RDH54	P38086	958 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	YBL028C	P38202	106 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	RFC1	P38630	861 aa	Known RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	PPE1	P38796	400 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	ARB1	P40024	610 aa	Known RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	FMP10	P40098	244 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	SEC28	P40509	296 aa	Known RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	MKT1	P40850	830 aa	Known RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	YJL055W	P47044	245 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	PSP2	P50109	593 aa	Known RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	PEX15	Q08215	383 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	YOL114C	Q12322	202 aa		5.72	□□□□□ -1.49
PDE1	YGL248W	TIF6	Q12522	245 aa	Known RBP	5.72	□□□□□ -1.49
PDE1	YGL248W	FLP1	P03870	423 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	SRD1	P09007	221 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	GCD1	P09032	578 aa	Predicted RBP	5.71	□□□□□ -1.5
PDE1	YGL248W	YER152C	P10356	443 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	COX11	P19516	300 aa	Known RBP	5.71	□□□□□ -1.5
PDE1	YGL248W	PCL2	P25693	308 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	SMI1	P32566	505 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	5.71	□□□□□ -1.5	not detected
PDE1	YGL248W	COY1	P34237	679 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	DID4	P36108	232 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	RIX1	P38883	763 aa	Predicted RBP	5.71	□□□□□ -1.5
PDE1	YGL248W	LSM5	P40089	93 aa	Known RBP	5.71	□□□□□ -1.5
PDE1	YGL248W	RIC1	P40395	1056 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	ARF3	P40994	183 aa	RIP-Chip data	5.71	□□□□□ -1.5	not detected
PDE1	YGL248W	XKS1	P42826	600 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	CIT3	P43635	486 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	YJR124C	P47159	448 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	GYP7	P48365	746 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	FOL2	P51601	243 aa	Known RBP	5.71	□□□□□ -1.5
PDE1	YGL248W	YNR065C	P53751	1116 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	YMR155W	Q03795	547 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	PHO92	Q06390	306 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	MCP2	Q06567	569 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	VHS3	Q08438	674 aa		5.71	□□□□□ -1.5
PDE1	YGL248W	BMS1	Q08965	1183 aa	Known RBP	5.71	□□□□□ -1.5
PDE1	YGL248W	PAR32	Q12515	295 aa	Known RBP	5.71	□□□□□ -1.5
PDE1	YGL248W	CTT1	P06115	562 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	POL3	P15436	1097 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	ERS1	P17261	260 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	LCB1	P25045	558 aa	Known RBP	5.7	□□□□□ -1.5
PDE1	YGL248W	PUP2	P32379	260 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	NIP1	P32497	812 aa	Known RBP	5.7	□□□□□ -1.5
PDE1	YGL248W	MRE11	P32829	692 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	UGA4	P32837	571 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	RPT3	P33298	428 aa	Known RBP	5.7	□□□□□ -1.5
PDE1	YGL248W	IRS4	P36115	615 aa	Known RBP	5.7	□□□□□ -1.5
PDE1	YGL248W	SMK1	P41808	388 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	RMD8	P43620	662 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	HOP2	P53187	214 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	NNF2	P53253	936 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	TEP1	P53916	434 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	TIM10	P87108	93 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	YPL071C	Q02864	156 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	HAS1	Q03532	505 aa	Known RBP	5.7	□□□□□ -1.5
PDE1	YGL248W	ADE13	Q05911	482 aa	Known RBP	5.7	□□□□□ -1.5
PDE1	YGL248W	SMD2	Q06217	110 aa	Known RBP	5.7	□□□□□ -1.5
PDE1	YGL248W	MDM36	Q06820	579 aa		5.7	□□□□□ -1.5
PDE1	YGL248W	CDC9	P04819	755 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	PHO84	P25297	587 aa	Known RBP	5.69	□□□□□ -1.5
PDE1	YGL248W	DAL3	P32459	195 aa		5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms