RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PLEKHM2Q8IWE5 1019 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 SIX5Q8N196 739 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 STK11IPQ8N1F8 1099 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 TSEN2Q8NCE0 465 aaKnown RBP1.88□□□□□ -2.11
VPS35-212ENST00000640313 UBASH3BQ8TF42 649 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 BCL7CQ8WUZ0 217 aaPredicted RBP1.88□□□□□ -2.11
VPS35-212ENST00000640313 SCG3Q8WXD2 468 aaKnown RBP1.88□□□□□ -2.11
VPS35-212ENST00000640313 WNT8BQ93098 351 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 KLHDC7BQ96G42 594 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 NSUN5Q96P11 429 aaKnown RBP1.88□□□□□ -2.11
VPS35-212ENST00000640313 ALG2Q9H553 416 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 OSGEPQ9NPF4 335 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 SEC31BQ9NQW1 1179 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 ZC3H7BQ9UGR2 993 aaKnown RBP1.88□□□□□ -2.11
VPS35-212ENST00000640313 SLC5A6Q9Y289 635 aa1.88□□□□□ -2.11
VPS35-212ENST00000640313 RTCBQ9Y3I0 505 aaKnown RBP1.88□□□□□ -2.11
VPS35-212ENST00000640313 USP17L5A8MUK1 530 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 GAS2O43903 313 aaKnown RBP1.87□□□□□ -2.11
VPS35-212ENST00000640313 SMNDC1O75940 238 aaKnown RBP eCLIP1.87□□□□□ -2.11
VPS35-212ENST00000640313 TIAF1O95411 115 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 TSPAN15O95858 294 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 ZSCAN22P10073 491 aaPredicted RBP1.87□□□□□ -2.11
VPS35-212ENST00000640313 ADMP35318 185 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 PIP4K2BP78356 416 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 PLCL1Q15111 1095 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 NFKBIBQ15653 356 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 DUSP27Q5VZP5 1158 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 SPRED2Q7Z698 418 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 LRRC56Q8IYG6 542 aaPredicted RBP1.87□□□□□ -2.11
VPS35-212ENST00000640313 DEPDC4Q8N2C3 294 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 SMG8Q8ND04 991 aaKnown RBP1.87□□□□□ -2.11
VPS35-212ENST00000640313 GATA6Q92908 595 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 CSRNP1Q96S65 589 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 PPP1R16BQ96T49 567 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 RUSC1Q9BVN2 902 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 CARD10Q9BWT7 1032 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 LACRTQ9GZZ8 138 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 SUGCTQ9HAC7 445 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 FAM53CQ9NYF3 392 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 LMCD1Q9NZU5 365 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 KLK14Q9P0G3 267 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 PRKAG2Q9UGJ0 569 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 KCNMB2Q9Y691 235 aa1.87□□□□□ -2.11
VPS35-212ENST00000640313 FAM170BA6NMN3 283 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 EPHA1P21709 976 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 FUT4P22083 530 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 IGFBP4P22692 258 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 RXRBP28702 533 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 CYP27A1Q02318 531 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 DGKZQ13574 1117 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 ECM1Q16610 540 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 C11orf91Q3C1V1 193 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 NUTM2GQ5VZR2 741 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 CEP135Q66GS9 1140 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 CDPF1Q6NVV7 123 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 ADAMTSL4Q6UY14 1074 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 DBX2Q6ZNG2 339 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 NLRP13Q86W25 1043 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 ANKLE2Q86XL3 938 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 OGFOD1Q8N543 542 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 C12orf50Q8NA57 414 aaPredicted RBP1.86□□□□□ -2.11
VPS35-212ENST00000640313 IL27Q8NEV9 243 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 OR13H1Q8NG92 308 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 CHMP7Q8WUX9 453 aaPredicted RBP1.86□□□□□ -2.11
VPS35-212ENST00000640313 EZH1Q92800 747 aaPredicted RBP1.86□□□□□ -2.11
VPS35-212ENST00000640313 MISP3Q96FF7 219 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 MYO19Q96H55 970 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 SPACA7Q96KW9 195 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 TBC1D32Q96NH3 1257 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 TMPRSS13Q9BYE2 586 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 GDPD2Q9HCC8 539 aa1.86□□□□□ -2.11
VPS35-212ENST00000640313 SH2B1Q9NRF2 756 aaPredicted RBP1.86□□□□□ -2.11
VPS35-212ENST00000640313 MBNL3Q9NUK0 354 aaKnown RBP1.86□□□□□ -2.11
VPS35-212ENST00000640313 LRRC10BA6NIK2 292 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 H3BRJ5 948 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 KIF4AO95239 1232 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 RNASE1P07998 156 aaKnown RBP1.85□□□□□ -2.11
VPS35-212ENST00000640313 PTPRAP18433 802 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 CDC25BP30305 580 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 ABL2P42684 1182 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 CTSWP56202 376 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 ATP11AP98196 1134 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 HYAL2Q12891 473 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 COL13A1Q5TAT6 717 aaPredicted RBP1.85□□□□□ -2.11
VPS35-212ENST00000640313 CMTR1Q8N1G2 835 aaKnown RBP1.85□□□□□ -2.11
VPS35-212ENST00000640313 FBLIM1Q8WUP2 373 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 PBX4Q9BYU1 374 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 ZMYND15Q9H091 742 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 RASSF4Q9H2L5 321 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 QTRT2Q9H974 415 aaKnown RBP1.85□□□□□ -2.11
VPS35-212ENST00000640313 RC3H2Q9HBD1 1191 aaKnown RBP1.85□□□□□ -2.11
VPS35-212ENST00000640313 CYP4F12Q9HCS2 524 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP1.85□□□□□ -2.11
VPS35-212ENST00000640313 USP20Q9Y2K6 914 aa1.85□□□□□ -2.11
VPS35-212ENST00000640313 RBM19Q9Y4C8 960 aaKnown RBP1.85□□□□□ -2.11
VPS35-212ENST00000640313 USP17L3A6NCW0 530 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 USP17L4A6NCW7 530 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 ZNF503-AS2A6NEH8 195 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 FAM177BA6PVY3 158 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 KRT1P04264 644 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms