RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 KRTAP4-9Q9BYQ8 210 aa6.89□□□□□ -1.31
USP48-215ENST00000534705 HIF3AQ9Y2N7 669 aa6.89□□□□□ -1.31
USP48-215ENST00000534705 KCNMB2Q9Y691 235 aa6.89□□□□□ -1.31
USP48-215ENST00000534705 FAM177BA6PVY3 158 aa6.88□□□□□ -1.31
USP48-215ENST00000534705 CDCA8Q53HL2 280 aa6.88□□□□□ -1.31
USP48-215ENST00000534705 OGFOD2Q6N063 350 aa6.88□□□□□ -1.31
USP48-215ENST00000534705 KIAA1211Q6ZU35 1233 aa6.88□□□□□ -1.31
USP48-215ENST00000534705 BEND4Q6ZU67 534 aa6.88□□□□□ -1.31
USP48-215ENST00000534705 KCNF1Q9H3M0 494 aa6.88□□□□□ -1.31
USP48-215ENST00000534705 ANGEL1Q9UNK9 670 aaKnown RBP6.88□□□□□ -1.31
USP48-215ENST00000534705 FSCN2O14926 492 aa6.87□□□□□ -1.31
USP48-215ENST00000534705 LGR5O75473 907 aa6.87□□□□□ -1.31
USP48-215ENST00000534705 BMP3P12645 472 aa6.87□□□□□ -1.31
USP48-215ENST00000534705 WEE1P30291 646 aa6.87□□□□□ -1.31
USP48-215ENST00000534705 HYAL2Q12891 473 aa6.87□□□□□ -1.31
USP48-215ENST00000534705 CEP135Q66GS9 1140 aa6.87□□□□□ -1.31
USP48-215ENST00000534705 ANKRD34AQ69YU3 496 aa6.87□□□□□ -1.31
USP48-215ENST00000534705 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.87□□□□□ -1.31
USP48-215ENST00000534705 KCNK4Q9NYG8 393 aa6.87□□□□□ -1.31
USP48-215ENST00000534705 PIM2Q9P1W9 311 aa6.87□□□□□ -1.31
USP48-215ENST00000534705 WDR64B1ANS9 1081 aa6.86□□□□□ -1.31
USP48-215ENST00000534705 FAM69CQ0P6D2 419 aa6.86□□□□□ -1.31
USP48-215ENST00000534705 ABI1Q8IZP0 508 aa6.86□□□□□ -1.31
USP48-215ENST00000534705 POU5F2Q8N7G0 328 aa6.86□□□□□ -1.31
USP48-215ENST00000534705 OR13H1Q8NG92 308 aa6.86□□□□□ -1.31
USP48-215ENST00000534705 STK32AQ8WU08 396 aa6.86□□□□□ -1.31
USP48-215ENST00000534705 LACRTQ9GZZ8 138 aa6.86□□□□□ -1.31
USP48-215ENST00000534705 ATG3Q9NT62 314 aa6.86□□□□□ -1.31
USP48-215ENST00000534705 TM4SF5O14894 197 aa6.85□□□□□ -1.31
USP48-215ENST00000534705 CPSF6Q16630 551 aaKnown RBP eCLIP6.85□□□□□ -1.31
USP48-215ENST00000534705 TMEM164Q5U3C3 297 aa6.85□□□□□ -1.31
USP48-215ENST00000534705 TXNDC11Q6PKC3 985 aa6.85□□□□□ -1.31
USP48-215ENST00000534705 FBXL18Q96ME1 805 aa6.85□□□□□ -1.31
USP48-215ENST00000534705 FAM13BQ9NYF5 915 aa6.85□□□□□ -1.31
USP48-215ENST00000534705 LRFN2Q9ULH4 789 aa6.85□□□□□ -1.31
USP48-215ENST00000534705 LEMD3Q9Y2U8 911 aa6.85□□□□□ -1.31
USP48-215ENST00000534705 SUPT5HO00267 1087 aaKnown RBP6.84□□□□□ -1.31
USP48-215ENST00000534705 C8AP07357 584 aa6.84□□□□□ -1.31
USP48-215ENST00000534705 CLP1Q92989 425 aaKnown RBP6.84□□□□□ -1.31
USP48-215ENST00000534705 WNT8BQ93098 351 aa6.84□□□□□ -1.31
USP48-215ENST00000534705 RNF208Q9H0X6 261 aa6.84□□□□□ -1.31
USP48-215ENST00000534705 SEC31BQ9NQW1 1179 aa6.84□□□□□ -1.31
USP48-215ENST00000534705 JUNBP17275 347 aaPredicted RBP6.83□□□□□ -1.32
USP48-215ENST00000534705 OCLNQ16625 522 aa6.83□□□□□ -1.32
USP48-215ENST00000534705 COL26A1Q96A83 441 aa6.83□□□□□ -1.32
USP48-215ENST00000534705 CARD10Q9BWT7 1032 aa6.83□□□□□ -1.32
USP48-215ENST00000534705 UBAP1LF5GYI3 381 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 PTPRAP18433 802 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 BRD2P25440 801 aaKnown RBP6.82□□□□□ -1.32
USP48-215ENST00000534705 CDC25BP30305 580 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 HOXA10P31260 410 aaPredicted RBP6.82□□□□□ -1.32
USP48-215ENST00000534705 SCNN1AP37088 669 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 ATP11AP98196 1134 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 TTC39BQ5VTQ0 682 aaPredicted RBP6.82□□□□□ -1.32
USP48-215ENST00000534705 FDX2Q6P4F2 183 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 CBLL1Q75N03 491 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 FOXD4L4Q8WXT5 416 aaPredicted RBP6.82□□□□□ -1.32
USP48-215ENST00000534705 PIK3R5Q8WYR1 880 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 MFSD14AQ96MC6 490 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 OSGEPQ9NPF4 335 aa6.82□□□□□ -1.32
USP48-215ENST00000534705 FNDC3AQ9Y2H6 1198 aaKnown RBP6.82□□□□□ -1.32
USP48-215ENST00000534705 PRNPP04156 253 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 FOSL1P15407 271 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 CABP4P57796 275 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 COX20Q5RI15 118 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 UBASH3BQ8TF42 649 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 KLHDC7BQ96G42 594 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 OSBPL1AQ9BXW6 950 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 PBX4Q9BYU1 374 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 CXXC1Q9P0U4 656 aaPredicted RBP6.81□□□□□ -1.32
USP48-215ENST00000534705 CCDC39Q9UFE4 941 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 USTQ9Y2C2 406 aa6.81□□□□□ -1.32
USP48-215ENST00000534705 DDX3YO15523 660 aaKnown RBP6.8□□□□□ -1.32
USP48-215ENST00000534705 GAS2O43903 313 aaKnown RBP6.8□□□□□ -1.32
USP48-215ENST00000534705 ADAM11O75078 769 aa6.8□□□□□ -1.32
USP48-215ENST00000534705 PREPP48147 710 aa6.8□□□□□ -1.32
USP48-215ENST00000534705 PIP4K2BP78356 416 aa6.8□□□□□ -1.32
USP48-215ENST00000534705 COL13A1Q5TAT6 717 aaPredicted RBP6.8□□□□□ -1.32
USP48-215ENST00000534705 VSIG10LQ86VR7 867 aa6.8□□□□□ -1.32
USP48-215ENST00000534705 TP53INP2Q8IXH6 220 aa6.8□□□□□ -1.32
USP48-215ENST00000534705 ADAM19Q9H013 955 aa6.8□□□□□ -1.32
USP48-215ENST00000534705 RASSF4Q9H2L5 321 aa6.8□□□□□ -1.32
USP48-215ENST00000534705 MEGF11A6BM72 1044 aa6.79□□□□□ -1.32
USP48-215ENST00000534705 TMEM88BA6NKF7 163 aa6.79□□□□□ -1.32
USP48-215ENST00000534705 H3BRJ5 948 aa6.79□□□□□ -1.32
USP48-215ENST00000534705 KIF4AO95239 1232 aa6.79□□□□□ -1.32
USP48-215ENST00000534705 ITGB5P18084 799 aa6.79□□□□□ -1.32
USP48-215ENST00000534705 EPHA1P21709 976 aa6.79□□□□□ -1.32
USP48-215ENST00000534705 MAP4P27816 1152 aaKnown RBP6.79□□□□□ -1.32
USP48-215ENST00000534705 TRIP4Q15650 581 aaPredicted RBP6.79□□□□□ -1.32
USP48-215ENST00000534705 MSMPQ1L6U9 139 aa6.79□□□□□ -1.32
USP48-215ENST00000534705 METTL22Q9BUU2 404 aaPredicted RBP6.79□□□□□ -1.32
USP48-215ENST00000534705 RUSC1Q9BVN2 902 aa6.79□□□□□ -1.32
USP48-215ENST00000534705 SH2B1Q9NRF2 756 aaPredicted RBP6.79□□□□□ -1.32
USP48-215ENST00000534705 PRMT3O60678 531 aa6.78□□□□□ -1.32
USP48-215ENST00000534705 FKBP5Q13451 457 aaPredicted RBP6.78□□□□□ -1.32
USP48-215ENST00000534705 ETFBKMTQ8IXQ9 262 aa6.78□□□□□ -1.32
USP48-215ENST00000534705 AGBL5Q8NDL9 886 aa6.78□□□□□ -1.32
USP48-215ENST00000534705 F13BP05160 661 aa6.77□□□□□ -1.33
USP48-215ENST00000534705 RXRBP28702 533 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms