RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 TANGO6Q9C0B7 1094 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 INTUQ9ULD6 942 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 CSPG5O95196 566 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 HNRNPUQ00839 825 aaKnown RBP eCLIP9.27□□□□□ -0.93
USP48-203ENST00000374732 JAZF1Q86VZ6 243 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 SNX32Q86XE0 403 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 ZBED9Q6R2W3 1325 aa9.27□□□□□ -0.93
USP48-203ENST00000374732 FSD2A1L4K1 749 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 TRIM37O94972 964 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 RECKO95980 971 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 ZFPM2Q8WW38 1151 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 BHMTQ93088 406 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 CDHR1Q96JP9 859 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 TTF2Q9UNY4 1162 aaKnown RBP9.26□□□□□ -0.93
USP48-203ENST00000374732 FAM135BQ49AJ0 1406 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 NPHP1O15259 732 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 HSP90AB1P08238 724 aaKnown RBP9.26□□□□□ -0.93
USP48-203ENST00000374732 ZNF24P17028 368 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 ADD2P35612 726 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 KRT77Q7Z794 578 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 SPOCK2Q92563 424 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 SLC39A3Q9BRY0 314 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 PPCSQ9HAB8 311 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 MRS2Q9HD23 443 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 PCDH12Q9NPG4 1184 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 LZTS1Q9Y250 596 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 ZNF652Q9Y2D9 606 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 NPHP4O75161 1426 aaPredicted RBP9.26□□□□□ -0.93
USP48-203ENST00000374732 ST20-MTHFSA0A0A6YYL1 179 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 TRIM66O15016 1216 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 IRX1P78414 480 aaPredicted RBP9.26□□□□□ -0.93
USP48-203ENST00000374732 POLA2Q14181 598 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 TRIM42Q8IWZ5 723 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 SVIPQ8NHG7 77 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 COG6Q9Y2V7 657 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 JRKLQ9Y4A0 524 aa9.26□□□□□ -0.93
USP48-203ENST00000374732 KIAA1210Q9ULL0 1709 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 LINC00854A0A1B0GVQ3 168 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 ATG7O95352 703 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 XRCC6P12956 609 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP48-203ENST00000374732 HOXA10P31260 410 aaPredicted RBP9.25□□□□□ -0.93
USP48-203ENST00000374732 AMPD3Q01432 767 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 SLMAPQ14BN4 828 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 SLC4A8Q2Y0W8 1093 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 SMARCC1Q92922 1105 aaPredicted RBP9.25□□□□□ -0.93
USP48-203ENST00000374732 TMEM87BQ96K49 555 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 GBP4Q96PP9 640 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.25□□□□□ -0.934e-7■■□□□ 13.5
USP48-203ENST00000374732 SEL1LQ9UBV2 794 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 EVLQ9UI08 416 aaPredicted RBP9.25□□□□□ -0.93
USP48-203ENST00000374732 KANK1Q14678 1352 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 SASH1O94885 1247 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 HDGFL2Q7Z4V5 671 aaPredicted RBP9.25□□□□□ -0.93
USP48-203ENST00000374732 FILIP1Q7Z7B0 1213 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 NOP9Q86U38 636 aaKnown RBP9.25□□□□□ -0.93
USP48-203ENST00000374732 HOXC10Q9NYD6 342 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 CWC15Q9P013 229 aaKnown RBP9.25□□□□□ -0.93
USP48-203ENST00000374732 EFCAB6Q5THR3 1501 aa9.25□□□□□ -0.93
USP48-203ENST00000374732 PIK3C2BO00750 1634 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 GTF2F1P35269 517 aaKnown RBP eCLIP9.24□□□□□ -0.931e-15■■□□□ 11.4
USP48-203ENST00000374732 GPSM2P81274 684 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 SHPRHQ149N8 1683 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 KRI1Q8N9T8 703 aaKnown RBP9.24□□□□□ -0.93
USP48-203ENST00000374732 USP33Q8TEY7 942 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 GOLGA1Q92805 767 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 DEF6Q9H4E7 631 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 IFT57Q9NWB7 429 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 MRPL42Q9Y6G3 142 aaKnown RBP9.24□□□□□ -0.93
USP48-203ENST00000374732 ADGRB3O60242 1522 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 PIK3R4Q99570 1358 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 TMEM110-MUSTN1A8MSY1 372 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 FOSP01100 380 aaPredicted RBP9.24□□□□□ -0.93
USP48-203ENST00000374732 HOXD10P28358 340 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 UBE4AQ14139 1066 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 PDXDC1Q6P996 788 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 AFAP1Q8N556 730 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 CCDC89Q8N998 374 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 TMC2Q8TDI7 906 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 HPS3Q969F9 1004 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 SNX21Q969T3 373 aa9.24□□□□□ -0.93
USP48-203ENST00000374732 SENP3Q9H4L4 574 aaPredicted RBP9.24□□□□□ -0.93
USP48-203ENST00000374732 F8VZ95 297 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 FGAP02671 866 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 MYOCDQ8IZQ8 938 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 FAM163AQ96GL9 167 aaPredicted RBP9.23□□□□□ -0.93
USP48-203ENST00000374732 IWS1Q96ST2 819 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 ESF1Q9H501 851 aaKnown RBP9.23□□□□□ -0.93
USP48-203ENST00000374732 RPAP3Q9H6T3 665 aaPredicted RBP9.23□□□□□ -0.93
USP48-203ENST00000374732 UPF2Q9HAU5 1272 aaKnown RBP9.23□□□□□ -0.93
USP48-203ENST00000374732 XIRP1Q702N8 1843 aaKnown RBP9.23□□□□□ -0.93
USP48-203ENST00000374732 SPDYE4A6NLX3 237 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 SPTLC2O15270 562 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 FGFR1OPO95684 399 aaKnown RBP9.23□□□□□ -0.93
USP48-203ENST00000374732 IMPDH2P12268 514 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 GJA8P48165 433 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 KIF4BQ2VIQ3 1234 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 SFMBT2Q5VUG0 894 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 CCDC26Q8TAB7 109 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 MRGBPQ9NV56 204 aa9.23□□□□□ -0.93
USP48-203ENST00000374732 DDX56Q9NY93 547 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms