RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	THI4	P32318	326 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	PEX6	P33760	1030 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	FMP52	P40008	231 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	HOS4	P40480	1083 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	QRI1	P43123	477 aa	Known RBP	3.59	□□□□□ -1.83
PKR1	YMR123W	YFL052W	P43551	465 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	TEX1	P53851	422 aa	Known RBP	3.59	□□□□□ -1.83
PKR1	YMR123W	RIA1	P53893	1110 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	COG8	Q04632	607 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	POB3	Q04636	552 aa	Known RBP	3.59	□□□□□ -1.83
PKR1	YMR123W	GAD1	Q04792	585 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	IRC10	Q08118	586 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	IRC13	Q08630	104 aa		3.59	□□□□□ -1.83
PKR1	YMR123W	SRD1	P09007	221 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	MIH1	P23748	554 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	HOG1	P32485	435 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	YEL1	P34225	687 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	APL2	P36000	726 aa	Predicted RBP	3.58	□□□□□ -1.84
PKR1	YMR123W	MIP6	P38760	659 aa	Known RBP	3.58	□□□□□ -1.84
PKR1	YMR123W	SDS3	P40505	327 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	PRP31	P49704	494 aa	Predicted RBP	3.58	□□□□□ -1.84
PKR1	YMR123W	UBC11	P52492	156 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	NPY1	P53164	384 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	ORC4	P54791	529 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	MCM21	Q06675	368 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	SGO1	Q08490	590 aa		3.58	□□□□□ -1.84
PKR1	YMR123W	ADE2	P21264	571 aa	Known RBP	3.57	□□□□□ -1.84
PKR1	YMR123W	MTH1	P35198	433 aa		3.57	□□□□□ -1.84
PKR1	YMR123W	YKR051W	P36142	418 aa		3.57	□□□□□ -1.84
PKR1	YMR123W	HSL7	P38274	827 aa		3.57	□□□□□ -1.84
PKR1	YMR123W	BCD1	P38772	366 aa		3.57	□□□□□ -1.84
PKR1	YMR123W	GND2	P53319	492 aa		3.57	□□□□□ -1.84
PKR1	YMR123W	ARG5,6	Q01217	863 aa		3.57	□□□□□ -1.84
PKR1	YMR123W	NHX1	Q04121	633 aa		3.57	□□□□□ -1.84
PKR1	YMR123W	NTG2	Q08214	380 aa		3.57	□□□□□ -1.84
PKR1	YMR123W	Q0142	Q9ZZW4	58 aa		3.57	□□□□□ -1.84
PKR1	YMR123W	SIR3	P06701	978 aa		3.56	□□□□□ -1.84
PKR1	YMR123W	RRP14	P36080	434 aa	Known RBP	3.56	□□□□□ -1.84
PKR1	YMR123W	YKR018C	P36114	725 aa		3.56	□□□□□ -1.84
PKR1	YMR123W	APT2	P36973	181 aa		3.56	□□□□□ -1.84
PKR1	YMR123W	YHR112C	P38716	378 aa		3.56	□□□□□ -1.84
PKR1	YMR123W	PCL5	P38794	229 aa		3.56	□□□□□ -1.84
PKR1	YMR123W	CCT3	P39077	534 aa	Known RBP	3.56	□□□□□ -1.84
PKR1	YMR123W	TEL2	P53038	688 aa		3.56	□□□□□ -1.84
PKR1	YMR123W	HMO1	Q03973	246 aa	Known RBP	3.56	□□□□□ -1.84
PKR1	YMR123W	RAD18	P10862	487 aa		3.55	□□□□□ -1.84
PKR1	YMR123W	PCL2	P25693	308 aa		3.55	□□□□□ -1.84
PKR1	YMR123W	HIR1	P32479	840 aa		3.55	□□□□□ -1.84
PKR1	YMR123W	HIS7	P33734	552 aa	Known RBP	3.55	□□□□□ -1.84
PKR1	YMR123W	SPC42	P36094	363 aa		3.55	□□□□□ -1.84
PKR1	YMR123W	TRZ1	P36159	838 aa	Predicted RBP	3.55	□□□□□ -1.84
PKR1	YMR123W	GID8	P40208	455 aa		3.55	□□□□□ -1.84
PKR1	YMR123W	PCL10	P53124	433 aa		3.55	□□□□□ -1.84
PKR1	YMR123W	YAP1802	P53309	568 aa		3.55	□□□□□ -1.84
PKR1	YMR123W	ORC1	P54784	914 aa	Predicted RBP	3.55	□□□□□ -1.84
PKR1	YMR123W	CTK1	Q03957	528 aa	Known RBP	3.55	□□□□□ -1.84
PKR1	YMR123W	RPN7	Q06103	429 aa	Known RBP	3.55	□□□□□ -1.84
PKR1	YMR123W	MET6	P05694	767 aa	Known RBP	3.54	□□□□□ -1.84
PKR1	YMR123W	REV7	P38927	245 aa		3.54	□□□□□ -1.84
PKR1	YMR123W	LYS9	P38999	446 aa		3.54	□□□□□ -1.84
PKR1	YMR123W	MTL1	P53214	551 aa		3.54	□□□□□ -1.84
PKR1	YMR123W	SSL2	Q00578	843 aa		3.54	□□□□□ -1.84
PKR1	YMR123W	ATG33	Q06485	197 aa		3.54	□□□□□ -1.84
PKR1	YMR123W	YLR001C	Q07895	862 aa		3.54	□□□□□ -1.84
PKR1	YMR123W	HRP1	Q99383	534 aa	Known RBP	3.54	□□□□□ -1.84
PKR1	YMR123W	PCM1	P38628	557 aa	Known RBP	3.53	□□□□□ -1.84
PKR1	YMR123W	FMO1	P38866	432 aa		3.53	□□□□□ -1.84
PKR1	YMR123W	NUP60	P39705	539 aa		3.53	□□□□□ -1.84
PKR1	YMR123W	SMX3	P54999	86 aa	Predicted RBP	3.53	□□□□□ -1.84
PKR1	YMR123W	ARP4	P80428	489 aa		3.53	□□□□□ -1.84
PKR1	YMR123W	REC102	Q02721	264 aa		3.53	□□□□□ -1.84
PKR1	YMR123W	MRH1	Q12117	320 aa	Predicted RBP	3.53	□□□□□ -1.84
PKR1	YMR123W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	3.53	□□□□□ -1.84	not detected
PKR1	YMR123W	YKL033W-A	Q86ZR7	236 aa		3.53	□□□□□ -1.84
PKR1	YMR123W	PYC1	P11154	1178 aa	Known RBP	3.52	□□□□□ -1.85
PKR1	YMR123W	HMG1	P12683	1054 aa		3.52	□□□□□ -1.85
PKR1	YMR123W	DOT6	P40059	670 aa	Known RBP	3.52	□□□□□ -1.85
PKR1	YMR123W	UBC9	P50623	157 aa	Predicted RBP	3.52	□□□□□ -1.85
PKR1	YMR123W	ALG12	P53730	551 aa		3.52	□□□□□ -1.85
PKR1	YMR123W	SFL1	P20134	766 aa		3.51	□□□□□ -1.85
PKR1	YMR123W	RNR1	P21524	888 aa	Known RBP	3.51	□□□□□ -1.85
PKR1	YMR123W	ERG6	P25087	383 aa	Known RBP	3.51	□□□□□ -1.85
PKR1	YMR123W	MVD1	P32377	396 aa	Known RBP	3.51	□□□□□ -1.85
PKR1	YMR123W	YPT53	P36019	220 aa		3.51	□□□□□ -1.85
PKR1	YMR123W	GET2	P40056	285 aa		3.51	□□□□□ -1.85
PKR1	YMR123W	PAN2	P53010	1115 aa	Predicted RBP	3.51	□□□□□ -1.85
PKR1	YMR123W	AIM14	P53109	570 aa		3.51	□□□□□ -1.85
PKR1	YMR123W	FHN1	P53279	174 aa		3.51	□□□□□ -1.85
PKR1	YMR123W	RNH70	P53331	553 aa		3.51	□□□□□ -1.85
PKR1	YMR123W	LEE1	Q02799	301 aa	Known RBP	3.51	□□□□□ -1.85
PKR1	YMR123W	GIN4	Q12263	1142 aa		3.51	□□□□□ -1.85
PKR1	YMR123W	CLF1	Q12309	687 aa	Predicted RBP	3.51	□□□□□ -1.85
PKR1	YMR123W	GFA1	P14742	717 aa	Known RBP	3.5	□□□□□ -1.85
PKR1	YMR123W	CDC43	P18898	376 aa		3.5	□□□□□ -1.85
PKR1	YMR123W	PEX1	P24004	1043 aa		3.5	□□□□□ -1.85
PKR1	YMR123W	CCR4	P31384	837 aa	Known RBP	3.5	□□□□□ -1.85
PKR1	YMR123W	APN2	P38207	520 aa		3.5	□□□□□ -1.85
PKR1	YMR123W	CBR1	P38626	284 aa	Known RBP	3.5	□□□□□ -1.85
PKR1	YMR123W	SFB3	P38810	929 aa		3.5	□□□□□ -1.85
PKR1	YMR123W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	3.5	□□□□□ -1.85	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 49.2 ms