RNA–Protein interactions for RNA: YKL213C

DOA1, Transcript of WD repeat protein required for ubiquitin-mediated protein degradation, yeast

Gene DOA1, Length 2,148 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA1	YKL213C	TMA16	Q08687	178 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	MED1	Q12321	566 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	MER1	P16523	270 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	NAM7	P30771	971 aa	Known RBP	5.24	□□□□□ -1.57
DOA1	YKL213C	YLF2	P38746	405 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	ARB1	P40024	610 aa	Known RBP	5.24	□□□□□ -1.57
DOA1	YKL213C	MCM6	P53091	1017 aa	Known RBP	5.24	□□□□□ -1.57
DOA1	YKL213C	TAM41	P53230	385 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	SNZ1	Q03148	297 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	YRM1	Q12340	786 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	VMA1	P17255	1071 aa	Known RBP	5.23	□□□□□ -1.57
DOA1	YKL213C	FAR1	P21268	830 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	BUD14	P27637	709 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	MSS51	P32335	436 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	PUP2	P32379	260 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	TIF3	P34167	436 aa	Known RBP	5.23	□□□□□ -1.57
DOA1	YKL213C	YET1	P35723	206 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	FUI1	P38196	639 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	OTU2	P38747	307 aa	Known RBP	5.23	□□□□□ -1.57
DOA1	YKL213C	TFG2	P41896	400 aa	Predicted RBP	5.23	□□□□□ -1.57
DOA1	YKL213C	SAD1	P43589	448 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	YNL146W	P53906	100 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	CUS1	Q02554	436 aa	Predicted RBP	5.23	□□□□□ -1.57
DOA1	YKL213C	YDR338C	Q05497	695 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	YAP7	Q08182	245 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	HFI1	Q12060	488 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	OSW2	Q12202	724 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	MOT1	P32333	1867 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	UBR2	Q07963	1872 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	PPG1	P32838	368 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	PEP12	P32854	288 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	DSF2	P38213	736 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	POA1	P38218	177 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	MED8	P38304	223 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	PET100	P38958	111 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	UBP5	P39944	805 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	IRR1	P40541	1150 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	JJJ3	P47138	172 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	HOP2	P53187	214 aa		5.23	□□□□□ -1.57
DOA1	YKL213C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	5.22	□□□□□ -1.57	RIP-Chip
DOA1	YKL213C	NAT1	P12945	854 aa	Known RBP	5.22	□□□□□ -1.57
DOA1	YKL213C	TRX2	P22803	104 aa	Known RBP	5.22	□□□□□ -1.57
DOA1	YKL213C	MRPL25	P23369	157 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	5.22	□□□□□ -1.57	not detected
DOA1	YKL213C	DPH2	P32461	534 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	TMT1	P32643	299 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	MRE11	P32829	692 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	MIC60	P36112	540 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	5.22	□□□□□ -1.57	RIP-Chip
DOA1	YKL213C	LCB2	P40970	561 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	RAD17	P48581	401 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	CUL3	P53202	744 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	ARV1	Q06541	321 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	GRC3	Q07845	632 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	MPC54	Q08550	464 aa		5.22	□□□□□ -1.57
DOA1	YKL213C	CDC53	Q12018	815 aa	Known RBP	5.22	□□□□□ -1.57
DOA1	YKL213C	WHI2	P12611	486 aa		5.21	□□□□□ -1.57
DOA1	YKL213C	PET123	P17558	318 aa		5.21	□□□□□ -1.57
DOA1	YKL213C	SPT8	P38915	602 aa		5.21	□□□□□ -1.57
DOA1	YKL213C	IAH1	P41734	238 aa		5.21	□□□□□ -1.57
DOA1	YKL213C	SHE4	P51534	789 aa		5.21	□□□□□ -1.57
DOA1	YKL213C	SHE10	P53075	577 aa		5.21	□□□□□ -1.57
DOA1	YKL213C	CWC21	Q03375	135 aa	Known RBP	5.21	□□□□□ -1.57
DOA1	YKL213C	TFB4	Q12004	338 aa		5.21	□□□□□ -1.57
DOA1	YKL213C	SLX4	Q12098	748 aa		5.21	□□□□□ -1.57
DOA1	YKL213C	KRR1	P25586	316 aa	Predicted RBP	5.21	□□□□□ -1.58
DOA1	YKL213C	FUB1	P25659	250 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	ACP1	P32463	125 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	RPC25	P35718	212 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	MIP6	P38760	659 aa	Known RBP	5.21	□□□□□ -1.58
DOA1	YKL213C	CTM1	P38818	585 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	APE4	P38821	490 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	YHR131C	P38835	850 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	VPS41	P38959	992 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	ECM1	P39715	212 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	YER034W	P40022	185 aa	Known RBP	5.21	□□□□□ -1.58
DOA1	YKL213C	PXA1	P41909	870 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	LAM5	P43560	674 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	SPO74	P45819	413 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	SET2	P46995	733 aa	Known RBP	5.21	□□□□□ -1.58
DOA1	YKL213C	ORC5	P50874	479 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	MNP1	P53163	194 aa	Predicted RBP	5.21	□□□□□ -1.58
DOA1	YKL213C	YGR035C	P53222	116 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	YDR090C	Q03193	310 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	ERB1	Q04660	807 aa	Known RBP	5.21	□□□□□ -1.58
DOA1	YKL213C	RNH1	Q04740	348 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	DON1	Q05610	365 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	ECM7	Q06200	448 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	DBP9	Q06218	594 aa	Known RBP	5.21	□□□□□ -1.58
DOA1	YKL213C	SPO75	Q07798	868 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	MLH2	Q07980	695 aa		5.21	□□□□□ -1.58
DOA1	YKL213C	RPS6A	P0CX37	236 aa	Known RBP	5.2	□□□□□ -1.58
DOA1	YKL213C	RPS6B	P0CX38	236 aa	Predicted RBP	5.2	□□□□□ -1.58
DOA1	YKL213C	CHS2	P14180	963 aa		5.2	□□□□□ -1.58
DOA1	YKL213C	HNM1	P19807	563 aa		5.2	□□□□□ -1.58
DOA1	YKL213C	MUD1	P32605	298 aa	Known RBP	5.2	□□□□□ -1.58
DOA1	YKL213C	SHM1	P37292	490 aa	Predicted RBP	5.2	□□□□□ -1.58
DOA1	YKL213C	VID24	P38263	362 aa		5.2	□□□□□ -1.58
DOA1	YKL213C	RTT105	P40063	208 aa		5.2	□□□□□ -1.58
DOA1	YKL213C	TIM8	P57744	87 aa		5.2	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 63.7 ms