RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C YJL045WP47052 634 aa2.32□□□□□ -2.04
UFD4YKL010C LYS5P50113 272 aa2.32□□□□□ -2.04
UFD4YKL010C BNI5P53890 448 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C DFG5Q05031 458 aa2.32□□□□□ -2.04
UFD4YKL010C YLR177WQ06251 628 aa2.32□□□□□ -2.04
UFD4YKL010C YIG1Q08956 461 aa2.32□□□□□ -2.04
UFD4YKL010C GPM3Q12326 303 aa2.32□□□□□ -2.04
UFD4YKL010C TY1B-AO13527 1196 aaKnown RBP2.31□□□□□ -2.04
UFD4YKL010C COX11P19516 300 aaKnown RBP2.31□□□□□ -2.04
UFD4YKL010C RPL5P26321 297 aaKnown RBP2.31□□□□□ -2.04
UFD4YKL010C GUT2P32191 649 aa2.31□□□□□ -2.04
UFD4YKL010C MDL2P33311 773 aa2.31□□□□□ -2.04
UFD4YKL010C GPB2P39717 880 aa2.31□□□□□ -2.04
UFD4YKL010C MMM1P41800 426 aa2.31□□□□□ -2.04
UFD4YKL010C MDJ2P42834 146 aa2.31□□□□□ -2.04
UFD4YKL010C JJJ3P47138 172 aa2.31□□□□□ -2.04
UFD4YKL010C SUB1P54000 292 aaKnown RBP2.31□□□□□ -2.04
UFD4YKL010C SOV1Q04748 898 aa2.31□□□□□ -2.04
UFD4YKL010C EIS1Q05050 843 aaKnown RBP2.31□□□□□ -2.04
UFD4YKL010C OMS1Q06668 471 aa2.31□□□□□ -2.04
UFD4YKL010C SMC6Q12749 1114 aa2.31□□□□□ -2.04
UFD4YKL010C AI5_BETAQ9ZZX0 354 aa2.31□□□□□ -2.04
UFD4YKL010C SRD1P09007 221 aa2.31□□□□□ -2.04
UFD4YKL010C CLN3P13365 580 aa2.31□□□□□ -2.04
UFD4YKL010C PSO2P30620 661 aa2.31□□□□□ -2.04
UFD4YKL010C DPH2P32461 534 aa2.31□□□□□ -2.04
UFD4YKL010C BLI1P35727 113 aa2.31□□□□□ -2.04
UFD4YKL010C SPP381P38282 291 aaPredicted RBP2.31□□□□□ -2.04
UFD4YKL010C AXL1P40851 1208 aa2.31□□□□□ -2.04
UFD4YKL010C EMP47P43555 445 aa2.31□□□□□ -2.04
UFD4YKL010C SAD1P43589 448 aa2.31□□□□□ -2.04
UFD4YKL010C TOF1P53840 1238 aa2.31□□□□□ -2.04
UFD4YKL010C GIS4Q04233 774 aa2.31□□□□□ -2.04
UFD4YKL010C CSM3Q04659 317 aa2.31□□□□□ -2.04
UFD4YKL010C CRF1Q04930 467 aa2.31□□□□□ -2.04
UFD4YKL010C CMS1Q07897 291 aaKnown RBP2.31□□□□□ -2.04
UFD4YKL010C YLR422WQ06409 1932 aa2.31□□□□□ -2.04
UFD4YKL010C RPS7AP26786 190 aaKnown RBP2.31□□□□□ -2.04
UFD4YKL010C YMC2P38087 329 aa2.31□□□□□ -2.04
UFD4YKL010C LCP5P40079 357 aaPredicted RBP2.31□□□□□ -2.04
UFD4YKL010C YTA12P40341 825 aa2.31□□□□□ -2.04
UFD4YKL010C SAP185P40856 1058 aa2.31□□□□□ -2.04
UFD4YKL010C YJL107CP42947 387 aa2.31□□□□□ -2.04
UFD4YKL010C POL31P46957 487 aa2.31□□□□□ -2.04
UFD4YKL010C ENT3P47160 408 aa2.31□□□□□ -2.04
UFD4YKL010C BRO1P48582 844 aa2.31□□□□□ -2.04
UFD4YKL010C NUT1P53114 1132 aa2.31□□□□□ -2.04
UFD4YKL010C YGL081WP53156 320 aa2.31□□□□□ -2.04
UFD4YKL010C MDR1P53258 950 aa2.31□□□□□ -2.04
UFD4YKL010C MSH6Q03834 1242 aa2.31□□□□□ -2.04
UFD4YKL010C YOL019WQ08157 551 aa2.31□□□□□ -2.04
UFD4YKL010C SNX3Q08826 162 aaKnown RBP2.31□□□□□ -2.04
UFD4YKL010C BI2P03873 423 aa2.3□□□□□ -2.04
UFD4YKL010C BI4P03879 638 aa2.3□□□□□ -2.04
UFD4YKL010C PFK1P16861 987 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C ADP1P25371 1049 aa2.3□□□□□ -2.04
UFD4YKL010C TIM23P32897 222 aa2.3□□□□□ -2.04
UFD4YKL010C LOS1P33418 1100 aaPredicted RBP2.3□□□□□ -2.04
UFD4YKL010C ARG2P40360 574 aa2.3□□□□□ -2.04
UFD4YKL010C SAE2P46946 345 aa2.3□□□□□ -2.04
UFD4YKL010C VPS53P47061 822 aa2.3□□□□□ -2.04
UFD4YKL010C GUP1P53154 560 aa2.3□□□□□ -2.04
UFD4YKL010C ISU1Q03020 165 aa2.3□□□□□ -2.04
UFD4YKL010C RRB1Q04225 511 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C RBA50Q04418 439 aa2.3□□□□□ -2.04
UFD4YKL010C TAF9Q05027 157 aa2.3□□□□□ -2.04
UFD4YKL010C UTP13Q05946 817 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C SLP1Q12232 587 aa2.3□□□□□ -2.04
UFD4YKL010C ARP6Q12509 438 aa2.3□□□□□ -2.04
UFD4YKL010C BI3Q9ZZW7 517 aa2.3□□□□□ -2.04
UFD4YKL010C MSH2P25847 964 aa2.3□□□□□ -2.04
UFD4YKL010C PDB1P32473 366 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C COT1P32798 439 aa2.3□□□□□ -2.04
UFD4YKL010C YEL1P34225 687 aa2.3□□□□□ -2.04
UFD4YKL010C SUL1P38359 859 aa2.3□□□□□ -2.04
UFD4YKL010C HOS4P40480 1083 aa2.3□□□□□ -2.04
UFD4YKL010C TMA22P47089 198 aaPredicted RBP2.3□□□□□ -2.04
UFD4YKL010C SGM1P47166 707 aa2.3□□□□□ -2.04
UFD4YKL010C SHE10P53075 577 aa2.3□□□□□ -2.04
UFD4YKL010C YGR117CP53270 476 aa2.3□□□□□ -2.04
UFD4YKL010C LSB1P53281 241 aa2.3□□□□□ -2.04
UFD4YKL010C RCF2P53721 224 aa2.3□□□□□ -2.04
UFD4YKL010C RPA49Q01080 415 aaPredicted RBP2.3□□□□□ -2.04
UFD4YKL010C URH1Q04179 340 aa2.3□□□□□ -2.04
UFD4YKL010C PIG1Q06216 648 aa2.3□□□□□ -2.04
UFD4YKL010C UBX5Q06682 500 aa2.3□□□□□ -2.04
UFD4YKL010C ATG20Q07528 640 aa2.3□□□□□ -2.04
UFD4YKL010C BDS1Q08347 646 aa2.3□□□□□ -2.04
UFD4YKL010C RNR1P21524 888 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C MSH3P25336 1018 aa2.3□□□□□ -2.04
UFD4YKL010C PUF4P25339 888 aaKnown RBP RIP-Chip data2.3□□□□□ -2.04 RIP-Chip
UFD4YKL010C SPT5P27692 1063 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C DAL1P32375 460 aa2.3□□□□□ -2.04
UFD4YKL010C CDC11P32458 415 aa2.3□□□□□ -2.04
UFD4YKL010C SWI3P32591 825 aa2.3□□□□□ -2.04
UFD4YKL010C SEC8P32855 1065 aa2.3□□□□□ -2.04
UFD4YKL010C PHO88P38264 188 aaPredicted RBP2.3□□□□□ -2.04
UFD4YKL010C RIX1P38883 763 aaPredicted RBP2.3□□□□□ -2.04
UFD4YKL010C RIO2P40160 425 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C RAD26P40352 1085 aa2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 70.3 ms