RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C MTL1P53214 551 aa4.05□□□□□ -1.76
RTR1YER139C UTP8P53276 713 aaKnown RBP4.05□□□□□ -1.76
RTR1YER139C MVD1P32377 396 aaKnown RBP4.04□□□□□ -1.76
RTR1YER139C MRK1P50873 501 aa4.04□□□□□ -1.76
RTR1YER139C PHR1P05066 565 aaKnown RBP RIP-Chip data4.03□□□□□ -1.76not detected
RTR1YER139C SCT1P32784 759 aa4.03□□□□□ -1.76
RTR1YER139C PHO11P35842 467 aa4.03□□□□□ -1.76
RTR1YER139C PHO12P38693 467 aa4.03□□□□□ -1.76
RTR1YER139C ECM1P39715 212 aa4.03□□□□□ -1.76
RTR1YER139C FHN1P53279 174 aa4.03□□□□□ -1.76
RTR1YER139C ALD6P54115 500 aaKnown RBP4.03□□□□□ -1.76
RTR1YER139C RGT2Q12300 763 aa4.03□□□□□ -1.76
RTR1YER139C ERG11P10614 530 aa4.02□□□□□ -1.77
RTR1YER139C PTP1P25044 335 aa4.02□□□□□ -1.77
RTR1YER139C YUR1P26725 428 aa4.02□□□□□ -1.77
RTR1YER139C SPC29P33419 253 aa4.02□□□□□ -1.77
RTR1YER139C MUP3P38734 546 aa4.02□□□□□ -1.77
RTR1YER139C LYS9P38999 446 aa4.02□□□□□ -1.77
RTR1YER139C ATG4P53867 494 aa4.02□□□□□ -1.77
RTR1YER139C SVF1Q05515 481 aa4.02□□□□□ -1.77
RTR1YER139C EAF1Q06337 982 aa4.02□□□□□ -1.77
RTR1YER139C RPL8BP29453 256 aaKnown RBP4.01□□□□□ -1.77
RTR1YER139C CCR4P31384 837 aaKnown RBP4.01□□□□□ -1.77
RTR1YER139C LTP1P40347 161 aa4.01□□□□□ -1.77
RTR1YER139C UBP6P43593 499 aaKnown RBP4.01□□□□□ -1.77
RTR1YER139C NET1P47035 1189 aa4.01□□□□□ -1.77
RTR1YER139C ZIP2P53061 704 aa4.01□□□□□ -1.77
RTR1YER139C ERP6P53198 216 aa4.01□□□□□ -1.77
RTR1YER139C YGR283CP53336 341 aaPredicted RBP4.01□□□□□ -1.77
RTR1YER139C RGC1Q06108 1083 aaKnown RBP4.01□□□□□ -1.77
RTR1YER139C YBR182C-AQ8TGU6 64 aa4.01□□□□□ -1.77
RTR1YER139C NUP60P39705 539 aa4□□□□□ -1.77
RTR1YER139C PRP31P49704 494 aaPredicted RBP4□□□□□ -1.77
RTR1YER139C CTK1Q03957 528 aaKnown RBP4□□□□□ -1.77
RTR1YER139C REH1Q06709 432 aa4□□□□□ -1.77
RTR1YER139C MLH3Q12083 715 aa4□□□□□ -1.77
RTR1YER139C YLR149CQ99296 730 aa4□□□□□ -1.77
RTR1YER139C YHR112CP38716 378 aa3.99□□□□□ -1.77
RTR1YER139C XBP1P40489 647 aa3.99□□□□□ -1.77
RTR1YER139C SHR5P41912 237 aa3.99□□□□□ -1.77
RTR1YER139C BPL1P48445 690 aaPredicted RBP3.99□□□□□ -1.77
RTR1YER139C MPS1P54199 764 aa3.99□□□□□ -1.77
RTR1YER139C USV1Q12132 391 aa3.99□□□□□ -1.77
RTR1YER139C THR1P17423 357 aaKnown RBP3.98□□□□□ -1.77
RTR1YER139C ARE1P25628 610 aa3.98□□□□□ -1.77
RTR1YER139C YBP2P53169 641 aa3.98□□□□□ -1.77
RTR1YER139C PGK1P00560 416 aaKnown RBP3.97□□□□□ -1.77
RTR1YER139C NUP1P20676 1076 aa3.97□□□□□ -1.77
RTR1YER139C ADE2P21264 571 aaKnown RBP3.97□□□□□ -1.77
RTR1YER139C RLP7P40693 322 aaKnown RBP3.97□□□□□ -1.77
RTR1YER139C SLK19Q08581 821 aaKnown RBP3.97□□□□□ -1.77
RTR1YER139C DIF1O13577 133 aa3.96□□□□□ -1.78
RTR1YER139C FUB1P25659 250 aa3.96□□□□□ -1.78
RTR1YER139C SET3P36124 751 aa3.96□□□□□ -1.78
RTR1YER139C HXT16P47185 567 aa3.96□□□□□ -1.78
RTR1YER139C FMP30Q02883 468 aa3.96□□□□□ -1.78
RTR1YER139C YDR514CQ04408 483 aa3.96□□□□□ -1.78
RTR1YER139C TDA9Q04545 1251 aa3.96□□□□□ -1.78
RTR1YER139C SPO75Q07798 868 aa3.96□□□□□ -1.78
RTR1YER139C HRP1Q99383 534 aaKnown RBP3.96□□□□□ -1.78
RTR1YER139C ERG6P25087 383 aaKnown RBP3.95□□□□□ -1.78
RTR1YER139C GRX1P25373 110 aaKnown RBP3.95□□□□□ -1.78
RTR1YER139C APL2P36000 726 aaPredicted RBP3.95□□□□□ -1.78
RTR1YER139C MET7Q08645 548 aa3.95□□□□□ -1.78
RTR1YER139C CIR2Q08822 631 aa3.95□□□□□ -1.78
RTR1YER139C RPA135P22138 1203 aaKnown RBP3.94□□□□□ -1.78
RTR1YER139C GMH1P36125 273 aa3.94□□□□□ -1.78
RTR1YER139C TRZ1P36159 838 aaPredicted RBP3.94□□□□□ -1.78
RTR1YER139C STB2P46679 850 aa3.94□□□□□ -1.78
RTR1YER139C ZDS1P50111 915 aaKnown RBP3.94□□□□□ -1.78
RTR1YER139C ARG5,6Q01217 863 aa3.94□□□□□ -1.78
RTR1YER139C NAN1Q02931 896 aaKnown RBP3.94□□□□□ -1.78
RTR1YER139C YDR338CQ05497 695 aa3.94□□□□□ -1.78
RTR1YER139C TOM70P07213 617 aaKnown RBP3.93□□□□□ -1.78
RTR1YER139C STE12P13574 688 aa3.93□□□□□ -1.78
RTR1YER139C ATP25Q03153 612 aa3.93□□□□□ -1.78
RTR1YER139C ZRT2Q12436 422 aa3.93□□□□□ -1.78
RTR1YER139C GET2P40056 285 aa3.92□□□□□ -1.78
RTR1YER139C ALG2P43636 503 aa3.92□□□□□ -1.78
RTR1YER139C MCM21Q06675 368 aa3.92□□□□□ -1.78
RTR1YER139C YDL124WQ07551 312 aaKnown RBP3.92□□□□□ -1.78
RTR1YER139C SSF2Q12153 453 aaPredicted RBP3.92□□□□□ -1.78
RTR1YER139C OSH2Q12451 1283 aa3.92□□□□□ -1.78
RTR1YER139C HSP60P19882 572 aaKnown RBP3.91□□□□□ -1.78
RTR1YER139C KCC4P25389 1037 aa3.91□□□□□ -1.78
RTR1YER139C PER1P25625 357 aa3.91□□□□□ -1.78
RTR1YER139C RGT1P32862 1170 aa3.91□□□□□ -1.78
RTR1YER139C APT2P36973 181 aa3.91□□□□□ -1.78
RTR1YER139C TAF8Q03750 510 aa3.91□□□□□ -1.78
RTR1YER139C APN1P22936 367 aa3.9□□□□□ -1.79
RTR1YER139C CRP1P38845 465 aaKnown RBP3.9□□□□□ -1.79
RTR1YER139C MIT1P40002 666 aa3.9□□□□□ -1.79
RTR1YER139C TY4A-JP47023 414 aa3.9□□□□□ -1.79
RTR1YER139C ALY2P47029 1046 aa3.9□□□□□ -1.79
RTR1YER139C CLF1Q12309 687 aaPredicted RBP3.9□□□□□ -1.79
RTR1YER139C MBR1P23493 339 aa3.89□□□□□ -1.79
RTR1YER139C SAT4P25333 603 aaKnown RBP3.89□□□□□ -1.79
RTR1YER139C YMC1P32331 307 aa3.89□□□□□ -1.79
RTR1YER139C BET3P36149 193 aa3.89□□□□□ -1.79
RTR1YER139C YMC2P38087 329 aa3.89□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 24.8 ms