RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W TY2B-DR2Q03494 1770 aa4.81□□□□□ -1.64
PRE1YER012W TY1B-DR1Q03855 1755 aa4.81□□□□□ -1.64
PRE1YER012W TY2B-DR3Q07791 1770 aaKnown RBP4.81□□□□□ -1.64
PRE1YER012W TY2B-OR1Q12113 1770 aa4.81□□□□□ -1.64
PRE1YER012W TY2B-DR1Q12472 1770 aa4.81□□□□□ -1.64
PRE1YER012W TY2B-OR2Q12501 1770 aa4.81□□□□□ -1.64
PRE1YER012W BNR1P40450 1375 aa4.8□□□□□ -1.64
PRE1YER012W PPZ2P33329 710 aa4.8□□□□□ -1.64
PRE1YER012W SIC1P38634 284 aa4.8□□□□□ -1.64
PRE1YER012W ALY2P47029 1046 aa4.8□□□□□ -1.64
PRE1YER012W RIA1P53893 1110 aa4.8□□□□□ -1.64
PRE1YER012W ATP25Q03153 612 aa4.8□□□□□ -1.64
PRE1YER012W YCF1P39109 1515 aaKnown RBP4.8□□□□□ -1.64
PRE1YER012W TY1B-BRQ12193 1756 aa4.79□□□□□ -1.64
PRE1YER012W TY1B-GR3Q12316 1755 aa4.79□□□□□ -1.64
PRE1YER012W TY1B-ORQ92393 1755 aa4.79□□□□□ -1.64
PRE1YER012W ERR1P0CX10 437 aa4.79□□□□□ -1.64
PRE1YER012W ERR2P0CX11 437 aa4.79□□□□□ -1.64
PRE1YER012W KIN3P22209 435 aa4.79□□□□□ -1.64
PRE1YER012W VPS73P53142 486 aaKnown RBP4.79□□□□□ -1.64
PRE1YER012W TEX1P53851 422 aaKnown RBP4.79□□□□□ -1.64
PRE1YER012W UFD4P33202 1483 aa4.78□□□□□ -1.64
PRE1YER012W GAL11P19659 1081 aa4.78□□□□□ -1.64
PRE1YER012W HSV2P50079 448 aaPredicted RBP4.78□□□□□ -1.64
PRE1YER012W ZDS1P50111 915 aaKnown RBP4.78□□□□□ -1.64
PRE1YER012W RGC1Q06108 1083 aaKnown RBP4.78□□□□□ -1.64
PRE1YER012W Q0142Q9ZZW4 58 aa4.78□□□□□ -1.64
PRE1YER012W SCC2Q04002 1493 aa4.77□□□□□ -1.65
PRE1YER012W HIR1P32479 840 aa4.77□□□□□ -1.65
PRE1YER012W SCT1P32784 759 aa4.77□□□□□ -1.65
PRE1YER012W FMP52P40008 231 aa4.77□□□□□ -1.65
PRE1YER012W YJL049WP47048 450 aa4.77□□□□□ -1.65
PRE1YER012W TAH11P47112 604 aa4.77□□□□□ -1.65
PRE1YER012W UBC11P52492 156 aa4.77□□□□□ -1.65
PRE1YER012W MTL1P53214 551 aa4.77□□□□□ -1.65
PRE1YER012W GAD1Q04792 585 aa4.77□□□□□ -1.65
PRE1YER012W NSE3Q05541 303 aa4.77□□□□□ -1.65
PRE1YER012W SGO1Q08490 590 aa4.77□□□□□ -1.65
PRE1YER012W DNF1P32660 1571 aa4.77□□□□□ -1.65
PRE1YER012W MET6P05694 767 aaKnown RBP4.76□□□□□ -1.65
PRE1YER012W GFA1P14742 717 aaKnown RBP4.76□□□□□ -1.65
PRE1YER012W YBR259WP38338 688 aa4.76□□□□□ -1.65
PRE1YER012W TEL2P53038 688 aa4.76□□□□□ -1.65
PRE1YER012W CDC43P18898 376 aa4.75□□□□□ -1.65
PRE1YER012W RIX1P38883 763 aaPredicted RBP4.75□□□□□ -1.65
PRE1YER012W PRP31P49704 494 aaPredicted RBP4.75□□□□□ -1.65
PRE1YER012W SSL2Q00578 843 aa4.75□□□□□ -1.65
PRE1YER012W TY1B-DR3Q99231 1755 aa4.74□□□□□ -1.65
PRE1YER012W FLO10P36170 1169 aa4.74□□□□□ -1.65
PRE1YER012W YHR112CP38716 378 aa4.74□□□□□ -1.65
PRE1YER012W SFB3P38810 929 aa4.74□□□□□ -1.65
PRE1YER012W GDH3P39708 457 aa4.74□□□□□ -1.65
PRE1YER012W YLR149CQ99296 730 aa4.74□□□□□ -1.65
PRE1YER012W TY2B-BQ12491 1770 aa4.73□□□□□ -1.65
PRE1YER012W ADE2P21264 571 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W ERG6P25087 383 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W MVD1P32377 396 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W FMO1P38866 432 aa4.73□□□□□ -1.65
PRE1YER012W LYS9P38999 446 aa4.73□□□□□ -1.65
PRE1YER012W BAP3P41815 604 aa4.73□□□□□ -1.65
PRE1YER012W PAN2P53010 1115 aaPredicted RBP4.73□□□□□ -1.65
PRE1YER012W MAL11P53048 616 aa4.73□□□□□ -1.65
PRE1YER012W YBP2P53169 641 aa4.73□□□□□ -1.65
PRE1YER012W ESC1Q03661 1658 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W TY1B-HO13535 1793 aa4.73□□□□□ -1.65
PRE1YER012W TY1B-DR5P0C2I2 1755 aa4.73□□□□□ -1.65
PRE1YER012W TY1B-DR6P0C2I3 1755 aa4.73□□□□□ -1.65
PRE1YER012W TY1B-LR2P0C2I5 1755 aa4.73□□□□□ -1.65
PRE1YER012W TY1B-LR3P0C2I6 1755 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W TY1B-PR1P0C2I9 1755 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W TY1B-PR2P0C2J0 1756 aa4.73□□□□□ -1.65
PRE1YER012W TY1B-PR3P0C2J1 1755 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W TY1B-JR1P47098 1755 aa4.73□□□□□ -1.65
PRE1YER012W TY1B-ML2Q03434 1755 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W TY1B-ER1Q03612 1755 aa4.73□□□□□ -1.65
PRE1YER012W TY1B-ML1Q04711 1755 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W TY1B-GR2Q12269 1755 aa4.73□□□□□ -1.65
PRE1YER012W TY1B-OLQ12273 1755 aa4.73□□□□□ -1.65
PRE1YER012W TY1B-PLQ12414 1755 aaKnown RBP4.73□□□□□ -1.65
PRE1YER012W HCA4P20448 770 aaKnown RBP4.72□□□□□ -1.65
PRE1YER012W HRB1P38922 454 aaKnown RBP RIP-Chip data4.72□□□□□ -1.65not detected
PRE1YER012W YJL206CP39529 758 aa4.72□□□□□ -1.65
PRE1YER012W CCT7P42943 550 aaKnown RBP4.72□□□□□ -1.65
PRE1YER012W YFL052WP43551 465 aa4.72□□□□□ -1.65
PRE1YER012W SMX3P54999 86 aaPredicted RBP4.72□□□□□ -1.65
PRE1YER012W YPK9Q12697 1472 aa4.72□□□□□ -1.65
PRE1YER012W CDC25P04821 1589 aa4.72□□□□□ -1.65
PRE1YER012W RPO31P04051 1460 aa4.71□□□□□ -1.66
PRE1YER012W STI1P15705 589 aaKnown RBP RIP-Chip data4.71□□□□□ -1.66not detected
PRE1YER012W TIM23P32897 222 aa4.71□□□□□ -1.66
PRE1YER012W MCD4P36051 919 aa4.71□□□□□ -1.66
PRE1YER012W ATG11Q12527 1178 aa4.71□□□□□ -1.66
PRE1YER012W RPA190P10964 1664 aaKnown RBP4.7□□□□□ -1.66
PRE1YER012W CDC9P04819 755 aa4.7□□□□□ -1.66
PRE1YER012W MDM10P18409 493 aa4.7□□□□□ -1.66
PRE1YER012W EMP70P32802 667 aa4.7□□□□□ -1.66
PRE1YER012W MTC2P34246 357 aa4.7□□□□□ -1.66
PRE1YER012W UBS1P38290 277 aa4.7□□□□□ -1.66
PRE1YER012W REV7P38927 245 aa4.7□□□□□ -1.66
PRE1YER012W CCT3P39077 534 aaKnown RBP4.7□□□□□ -1.66
Retrieved 100 of 5,963 RNA–protein pairs in 65.8 ms