RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 WASHC4Q2M389 1173 aa13.21□□□□□ -0.29
LDLR-208ENST00000558518 KIF20BQ96Q89 1820 aa13.21□□□□□ -0.29
LDLR-208ENST00000558518 FLT4P35916 1363 aa13.21□□□□□ -0.29
LDLR-208ENST00000558518 ATP1A3P13637 1013 aa13.21□□□□□ -0.3
LDLR-208ENST00000558518 HDGFP51858 240 aaKnown RBP13.21□□□□□ -0.3
LDLR-208ENST00000558518 IRX5P78411 483 aaPredicted RBP13.21□□□□□ -0.3
LDLR-208ENST00000558518 TFCP2Q12800 502 aa13.21□□□□□ -0.3
LDLR-208ENST00000558518 TM6SF1Q9BZW5 370 aa13.21□□□□□ -0.3
LDLR-208ENST00000558518 RIMS1Q86UR5 1692 aaKnown RBP13.21□□□□□ -0.3
LDLR-208ENST00000558518 FRMPD1Q5SYB0 1578 aa13.21□□□□□ -0.3
LDLR-208ENST00000558518 MAP3K5Q99683 1374 aa13.21□□□□□ -0.3
LDLR-208ENST00000558518 GRM8O00222 908 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 FKBP4Q02790 459 aaKnown RBP eCLIP13.2□□□□□ -0.3
LDLR-208ENST00000558518 SYNE3Q6ZMZ3 975 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 UBE3BQ7Z3V4 1068 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 DBNDD2Q9BQY9 259 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 ABCA9Q8IUA7 1624 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 ROBO2Q9HCK4 1378 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 LMTK2Q8IWU2 1503 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 CYP21A2P08686 494 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 CLCN6P51797 869 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 TPM4P67936 248 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 NEXNQ0ZGT2 675 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 RESTQ13127 1097 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 IQCB1Q15051 598 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 DBF4Q9UBU7 674 aaPredicted RBP13.2□□□□□ -0.3
LDLR-208ENST00000558518 AMOTL2Q9Y2J4 779 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 HIP1O00291 1037 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 NDUFA8P51970 172 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 SPECC1Q5M775 1068 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 NBPF6Q5VWK0 638 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 NBPF4Q96M43 638 aa13.2□□□□□ -0.3
LDLR-208ENST00000558518 CCZ1BP86790 482 aa13.19□□□□□ -0.3
LDLR-208ENST00000558518 CCZ1P86791 482 aaPredicted RBP13.19□□□□□ -0.3
LDLR-208ENST00000558518 BMS1Q14692 1282 aaKnown RBP13.19□□□□□ -0.3
LDLR-208ENST00000558518 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.19□□□□□ -0.3
LDLR-208ENST00000558518 CCDC82Q8N4S0 544 aa13.19□□□□□ -0.3
LDLR-208ENST00000558518 CPLX3Q8WVH0 158 aa13.19□□□□□ -0.3
LDLR-208ENST00000558518 TMEM51Q9NW97 253 aa13.19□□□□□ -0.3
LDLR-208ENST00000558518 TTC21AQ8NDW8 1320 aa13.19□□□□□ -0.3
LDLR-208ENST00000558518 KARSQ15046 597 aaKnown RBP13.19□□□□□ -0.3
LDLR-208ENST00000558518 ZNF396Q96N95 335 aaPredicted RBP13.19□□□□□ -0.3
LDLR-208ENST00000558518 MORC2Q9Y6X9 1032 aaPredicted RBP13.19□□□□□ -0.3
LDLR-208ENST00000558518 ARAP3Q8WWN8 1544 aa13.19□□□□□ -0.3
LDLR-208ENST00000558518 TAF5LO75529 589 aa13.19□□□□□ -0.3
LDLR-208ENST00000558518 SLC3A2P08195 630 aaKnown RBP13.19□□□□□ -0.3
LDLR-208ENST00000558518 HNRNPH2P55795 449 aaKnown RBP13.19□□□□□ -0.3
LDLR-208ENST00000558518 TIMM10P62072 90 aa13.19□□□□□ -0.3
LDLR-208ENST00000558518 PPP1R13BQ96KQ4 1090 aa13.19□□□□□ -0.3
LDLR-208ENST00000558518 ELP1O95163 1332 aa13.18□□□□□ -0.3
LDLR-208ENST00000558518 ARGLU1Q9NWB6 273 aaPredicted RBP13.18□□□□□ -0.3
LDLR-208ENST00000558518 ZNF446Q9NWS9 450 aa13.18□□□□□ -0.3
LDLR-208ENST00000558518 DHX40Q8IX18 779 aaKnown RBP13.18□□□□□ -0.3
LDLR-208ENST00000558518 RNF216Q9NWF9 866 aaPredicted RBP13.18□□□□□ -0.3
LDLR-208ENST00000558518 PCDHA7Q9UN72 937 aa13.18□□□□□ -0.3
LDLR-208ENST00000558518 CLIC4Q9Y696 253 aa13.18□□□□□ -0.3
LDLR-208ENST00000558518 GNG11P61952 73 aa13.18□□□□□ -0.3
LDLR-208ENST00000558518 PDE4CQ08493 712 aa13.18□□□□□ -0.3
LDLR-208ENST00000558518 C10orf67Q8IYJ2 551 aa13.18□□□□□ -0.3
LDLR-208ENST00000558518 MRPS27Q92552 414 aaKnown RBP13.18□□□□□ -0.3
LDLR-208ENST00000558518 PHACTR2O75167 634 aa13.17□□□□□ -0.3
LDLR-208ENST00000558518 LMAN1P49257 510 aa13.17□□□□□ -0.3
LDLR-208ENST00000558518 FAM160A1Q05DH4 1040 aa13.17□□□□□ -0.3
LDLR-208ENST00000558518 EPHA10Q5JZY3 1008 aa13.17□□□□□ -0.3
LDLR-208ENST00000558518 E4F1Q66K89 784 aaPredicted RBP13.17□□□□□ -0.3
LDLR-208ENST00000558518 DDX58O95786 925 aaKnown RBP13.17□□□□□ -0.3
LDLR-208ENST00000558518 UBASH3AP57075 661 aa13.17□□□□□ -0.3
LDLR-208ENST00000558518 MCM6Q14566 821 aa13.17□□□□□ -0.3
LDLR-208ENST00000558518 KSR2Q6VAB6 950 aa13.17□□□□□ -0.3
LDLR-208ENST00000558518 OSCARQ8IYS5 282 aa13.17□□□□□ -0.3
LDLR-208ENST00000558518 MLH3Q9UHC1 1453 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 HECW2Q9P2P5 1572 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 APPP05067 770 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 ARMCX5Q6P1M9 558 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 KRBA2Q6ZNG9 492 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 COPS6Q7L5N1 327 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 MRFAP1L1Q96HT8 127 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 C8orf76Q96K31 380 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 DESI2Q9BSY9 194 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 ZSCAN16Q9H4T2 348 aaPredicted RBP13.16□□□□□ -0.3
LDLR-208ENST00000558518 CALCOCO1Q9P1Z2 691 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.16□□□□□ -0.38e-8■■□□□ 11.7
LDLR-208ENST00000558518 IGSF1Q8N6C5 1336 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 ANKRD65E5RJM6 399 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 EVCP57679 992 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 XAGE3Q8WTP9 111 aa13.16□□□□□ -0.3
LDLR-208ENST00000558518 DBNLQ9UJU6 430 aaKnown RBP13.16□□□□□ -0.3
LDLR-208ENST00000558518 NEMFO60524 1076 aa13.15□□□□□ -0.3
LDLR-208ENST00000558518 ST5P78524 1137 aa13.15□□□□□ -0.3
LDLR-208ENST00000558518 KRT32Q14532 448 aa13.15□□□□□ -0.3
LDLR-208ENST00000558518 TAF3Q5VWG9 929 aa13.15□□□□□ -0.3
LDLR-208ENST00000558518 STOX1Q6ZVD7 989 aa13.15□□□□□ -0.3
LDLR-208ENST00000558518 TOMM22Q9NS69 142 aa13.15□□□□□ -0.3
LDLR-208ENST00000558518 PNMA6AP0CW24 399 aaPredicted RBP13.15□□□□□ -0.3
LDLR-208ENST00000558518 LTKP29376 864 aa13.15□□□□□ -0.3
LDLR-208ENST00000558518 NSUN7Q8NE18 718 aaKnown RBP13.15□□□□□ -0.3
LDLR-208ENST00000558518 PUF60Q9UHX1 559 aaKnown RBP13.15□□□□□ -0.3
LDLR-208ENST00000558518 AIFM3Q96NN9 605 aa13.15□□□□□ -0.3
LDLR-208ENST00000558518 CEP170BQ9Y4F5 1589 aaPredicted RBP13.15□□□□□ -0.3
LDLR-208ENST00000558518 CTAGE5O15320 804 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms