RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 POLR1AO95602 1720 aaPredicted RBP8.65□□□□□ -1.03
USP28-202ENST00000535607 MPSTP25325 297 aa8.64□□□□□ -1.03
USP28-202ENST00000535607 MSX1P28360 303 aa8.64□□□□□ -1.03
USP28-202ENST00000535607 MARSP56192 900 aaKnown RBP8.64□□□□□ -1.03
USP28-202ENST00000535607 TMC1Q8TDI8 760 aa8.64□□□□□ -1.03
USP28-202ENST00000535607 IFT43Q96FT9 208 aa8.64□□□□□ -1.03
USP28-202ENST00000535607 KLK14Q9P0G3 267 aa8.64□□□□□ -1.03
USP28-202ENST00000535607 AGLP35573 1532 aa8.64□□□□□ -1.03
USP28-202ENST00000535607 A2MP01023 1474 aa8.64□□□□□ -1.03
USP28-202ENST00000535607 IQGAP3Q86VI3 1631 aa8.63□□□□□ -1.03
USP28-202ENST00000535607 TCERG1O14776 1098 aaKnown RBP8.63□□□□□ -1.03
USP28-202ENST00000535607 F11P03951 625 aa8.63□□□□□ -1.03
USP28-202ENST00000535607 MAPK1P28482 360 aa8.63□□□□□ -1.03
USP28-202ENST00000535607 IRX6P78412 446 aaPredicted RBP8.63□□□□□ -1.03
USP28-202ENST00000535607 ZSCAN29Q8IWY8 852 aaPredicted RBP8.63□□□□□ -1.03
USP28-202ENST00000535607 ZC3H13Q5T200 1668 aaKnown RBP8.62□□□□□ -1.03
USP28-202ENST00000535607 DHX29Q7Z478 1369 aaKnown RBP8.62□□□□□ -1.03
USP28-202ENST00000535607 H7C1W4 665 aa8.62□□□□□ -1.03
USP28-202ENST00000535607 EPB42P16452 691 aa8.62□□□□□ -1.03
USP28-202ENST00000535607 ZNF295-AS1Q8N0V1 137 aa8.62□□□□□ -1.03
USP28-202ENST00000535607 AFAP1Q8N556 730 aa8.62□□□□□ -1.03
USP28-202ENST00000535607 MRS2Q9HD23 443 aa8.62□□□□□ -1.03
USP28-202ENST00000535607 DCTN4Q9UJW0 460 aa8.62□□□□□ -1.03
USP28-202ENST00000535607 COL17A1Q9UMD9 1497 aaPredicted RBP8.62□□□□□ -1.03
USP28-202ENST00000535607 C11orf95C9JLR9 678 aaPredicted RBP8.61□□□□□ -1.03
USP28-202ENST00000535607 LRRC69Q6ZNQ3 347 aa8.61□□□□□ -1.03
USP28-202ENST00000535607 TRIM47Q96LD4 638 aa8.61□□□□□ -1.03
USP28-202ENST00000535607 RUBCNLQ9H714 662 aa8.61□□□□□ -1.03
USP28-202ENST00000535607 LRFN2Q9ULH4 789 aa8.61□□□□□ -1.03
USP28-202ENST00000535607 ATP10AO60312 1499 aa8.61□□□□□ -1.03
USP28-202ENST00000535607 VWDEQ8N2E2 1590 aa8.61□□□□□ -1.03
USP28-202ENST00000535607 WASHC2AQ641Q2 1341 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 A0A1W2PNR3 127 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 TGFBR3LH3BV60 316 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 RPLP1P05386 114 aaKnown RBP8.6□□□□□ -1.03
USP28-202ENST00000535607 ERCC3P19447 782 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 EIF1AXP47813 144 aaKnown RBP8.6□□□□□ -1.03
USP28-202ENST00000535607 FIGNL1Q6PIW4 674 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 UBE2Q2Q8WVN8 375 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 SUSD3Q96L08 255 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 RRP7BPQ9NSQ0 103 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 DACH1Q9UI36 760 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 NUDCQ9Y266 331 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 MROH1Q8NDA8 1641 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 YEATS2Q9ULM3 1422 aa8.6□□□□□ -1.03
USP28-202ENST00000535607 LMTK2Q8IWU2 1503 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 SOBPA7XYQ1 873 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 RAPGEF3O95398 923 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 ATP4AP20648 1035 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 ZAP70P43403 619 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 USP5P45974 858 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 PTSQ03393 145 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 LBRQ14739 615 aaKnown RBP8.59□□□□□ -1.03
USP28-202ENST00000535607 GLIPR1L2Q4G1C9 344 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 TREML1Q86YW5 311 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 PIK3R5Q8WYR1 880 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 CEP63Q96MT8 703 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 ZIC5Q96T25 663 aa8.59□□□□□ -1.03
USP28-202ENST00000535607 PRKRIP1Q9H875 184 aaPredicted RBP8.59□□□□□ -1.03
USP28-202ENST00000535607 GMPR2Q9P2T1 348 aaKnown RBP8.59□□□□□ -1.03
USP28-202ENST00000535607 RNF123Q5XPI4 1314 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 TNFRSF10BO14763 440 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 MICAL2O94851 1124 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 HSPA5P11021 654 aaKnown RBP8.58□□□□□ -1.04
USP28-202ENST00000535607 NPR3P17342 541 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 DNM1Q05193 864 aaKnown RBP8.58□□□□□ -1.04
USP28-202ENST00000535607 PDE3BQ13370 1112 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 IER5Q5VY09 327 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 FOXR1Q6PIV2 292 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 NLRP8Q86W28 1048 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 FAM9BQ8IZU0 186 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 HSH2DQ96JZ2 352 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 HIRIP3Q9BW71 556 aaPredicted RBP8.58□□□□□ -1.04
USP28-202ENST00000535607 CRISPLD1Q9H336 500 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 TET3O43151 1660 aa8.58□□□□□ -1.04
USP28-202ENST00000535607 ARID4BQ4LE39 1312 aaPredicted RBP8.57□□□□□ -1.04
USP28-202ENST00000535607 NEFMP07197 916 aa8.57□□□□□ -1.04
USP28-202ENST00000535607 ARSDP51689 593 aa8.57□□□□□ -1.04
USP28-202ENST00000535607 NUCKS1Q9H1E3 243 aaKnown RBP8.57□□□□□ -1.04
USP28-202ENST00000535607 FNDC3AQ9Y2H6 1198 aaKnown RBP8.57□□□□□ -1.04
USP28-202ENST00000535607 EFCAB6Q5THR3 1501 aa8.57□□□□□ -1.04
USP28-202ENST00000535607 KANK1Q14678 1352 aa8.57□□□□□ -1.04
USP28-202ENST00000535607 KTN1Q86UP2 1357 aaKnown RBP8.57□□□□□ -1.04
USP28-202ENST00000535607 CCDC7Q96M83 1385 aa8.57□□□□□ -1.04
USP28-202ENST00000535607 PZPP20742 1482 aa8.57□□□□□ -1.04
USP28-202ENST00000535607 WASHC2CQ9Y4E1 1318 aa8.56□□□□□ -1.04
USP28-202ENST00000535607 IDH3AP50213 366 aa8.56□□□□□ -1.04
USP28-202ENST00000535607 BTLAQ7Z6A9 289 aa8.56□□□□□ -1.04
USP28-202ENST00000535607 ETFBKMTQ8IXQ9 262 aa8.56□□□□□ -1.04
USP28-202ENST00000535607 CCDC155Q8N6L0 562 aa8.56□□□□□ -1.04
USP28-202ENST00000535607 GMCL1Q96IK5 515 aa8.56□□□□□ -1.04
USP28-202ENST00000535607 CITED4Q96RK1 184 aa8.56□□□□□ -1.04
USP28-202ENST00000535607 RPRD2Q5VT52 1461 aaKnown RBP8.56□□□□□ -1.04
USP28-202ENST00000535607 MZF1P28698 734 aaPredicted RBP8.55□□□□□ -1.04
USP28-202ENST00000535607 C8orf34Q49A92 452 aa8.55□□□□□ -1.04
USP28-202ENST00000535607 GPR152Q8TDT2 470 aa8.55□□□□□ -1.04
USP28-202ENST00000535607 EDEM1Q92611 657 aa8.55□□□□□ -1.04
USP28-202ENST00000535607 PHF24Q9UPV7 400 aa8.55□□□□□ -1.04
USP28-202ENST00000535607 ABCC3O15438 1527 aa8.54□□□□□ -1.04
USP28-202ENST00000535607 ROCK2O75116 1388 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms