RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 NLRP10Q86W26 655 aa9.05□□□□□ -0.96
HDAC1-204ENST00000471488 REM2Q8IYK8 340 aaPredicted RBP9.05□□□□□ -0.96
HDAC1-204ENST00000471488 CCER1Q8TC90 406 aaPredicted RBP9.05□□□□□ -0.96
HDAC1-204ENST00000471488 XAGE3Q8WTP9 111 aa9.05□□□□□ -0.96
HDAC1-204ENST00000471488 CELF1Q92879 486 aaKnown RBP9.05□□□□□ -0.96
HDAC1-204ENST00000471488 ANKIB1Q9P2G1 1089 aa9.05□□□□□ -0.96
HDAC1-204ENST00000471488 POLLQ9UGP5 575 aa9.05□□□□□ -0.96
HDAC1-204ENST00000471488 RTL9Q8NET4 1388 aa9.04□□□□□ -0.96
HDAC1-204ENST00000471488 FKTNO75072 461 aa9.04□□□□□ -0.96
HDAC1-204ENST00000471488 UFL1O94874 794 aa9.04□□□□□ -0.96
HDAC1-204ENST00000471488 NF2P35240 595 aa9.04□□□□□ -0.96
HDAC1-204ENST00000471488 TCIRG1Q13488 830 aa9.04□□□□□ -0.96
HDAC1-204ENST00000471488 HSP90AB3PQ58FF7 597 aa9.04□□□□□ -0.96
HDAC1-204ENST00000471488 FAM89AQ96GI7 184 aa9.04□□□□□ -0.96
HDAC1-204ENST00000471488 TRIM17Q9Y577 477 aa9.04□□□□□ -0.96
HDAC1-204ENST00000471488 MAPK8IP3Q9UPT6 1336 aa9.04□□□□□ -0.96
HDAC1-204ENST00000471488 POTEFA5A3E0 1075 aa9.03□□□□□ -0.96
HDAC1-204ENST00000471488 MYCP01106 439 aaPredicted RBP9.03□□□□□ -0.96
HDAC1-204ENST00000471488 SREBF2Q12772 1141 aa9.03□□□□□ -0.96
HDAC1-204ENST00000471488 TMC4Q7Z404 712 aa9.03□□□□□ -0.96
HDAC1-204ENST00000471488 CCDC85AQ96PX6 553 aaPredicted RBP9.03□□□□□ -0.96
HDAC1-204ENST00000471488 MYOZ2Q9NPC6 264 aa9.03□□□□□ -0.96
HDAC1-204ENST00000471488 LAS1LQ9Y4W2 734 aaKnown RBP9.03□□□□□ -0.96
HDAC1-204ENST00000471488 LAMB2P55268 1798 aa9.03□□□□□ -0.96
HDAC1-204ENST00000471488 ATP5J2-PTCD1G3V325 749 aa9.02□□□□□ -0.97
HDAC1-204ENST00000471488 PPP2R1AP30153 589 aa9.02□□□□□ -0.97
HDAC1-204ENST00000471488 TBC1D16Q8TBP0 767 aa9.02□□□□□ -0.97
HDAC1-204ENST00000471488 DUOX1Q9NRD9 1551 aa9.02□□□□□ -0.97
HDAC1-204ENST00000471488 VIL1P09327 827 aaKnown RBP9.01□□□□□ -0.97
HDAC1-204ENST00000471488 USP17L8P0C7I0 530 aa9.01□□□□□ -0.97
HDAC1-204ENST00000471488 FKBP1BP68106 108 aa9.01□□□□□ -0.97
HDAC1-204ENST00000471488 NFE2L2Q16236 605 aa9.01□□□□□ -0.97
HDAC1-204ENST00000471488 RSBN1LQ6PCB5 846 aaPredicted RBP9.01□□□□□ -0.97
HDAC1-204ENST00000471488 R3HDMLQ9H3Y0 253 aa9.01□□□□□ -0.97
HDAC1-204ENST00000471488 GGA1Q9UJY5 639 aa9.01□□□□□ -0.97
HDAC1-204ENST00000471488 KDM3BQ7LBC6 1761 aa9.01□□□□□ -0.97
HDAC1-204ENST00000471488 ERBB4Q15303 1308 aa9.01□□□□□ -0.97
HDAC1-204ENST00000471488 ANKRD36CQ5JPF3 1778 aa9□□□□□ -0.97
HDAC1-204ENST00000471488 PAPPA2Q9BXP8 1791 aa9□□□□□ -0.97
HDAC1-204ENST00000471488 EN2P19622 333 aaPredicted RBP9□□□□□ -0.97
HDAC1-204ENST00000471488 RPS8P62241 208 aaKnown RBP9□□□□□ -0.97
HDAC1-204ENST00000471488 PDIA6Q15084 440 aa9□□□□□ -0.97
HDAC1-204ENST00000471488 NBPF9Q3BBW0 867 aa9□□□□□ -0.97
HDAC1-204ENST00000471488 ARMC9Q7Z3E5 817 aa9□□□□□ -0.97
HDAC1-204ENST00000471488 ANGEL1Q9UNK9 670 aaKnown RBP9□□□□□ -0.97
HDAC1-204ENST00000471488 FZD1Q9UP38 647 aa9□□□□□ -0.97
HDAC1-204ENST00000471488 CLSPNQ9HAW4 1339 aa9□□□□□ -0.97
HDAC1-204ENST00000471488 IRS4O14654 1257 aaPredicted RBP8.99□□□□□ -0.97
HDAC1-204ENST00000471488 SASH1O94885 1247 aa8.99□□□□□ -0.97
HDAC1-204ENST00000471488 TM4SF4P48230 202 aa8.99□□□□□ -0.97
HDAC1-204ENST00000471488 FXR1P51114 621 aaKnown RBP eCLIP8.99□□□□□ -0.97
HDAC1-204ENST00000471488 OTOP1Q7RTM1 612 aa8.99□□□□□ -0.97
HDAC1-204ENST00000471488 OGFOD1Q8N543 542 aa8.99□□□□□ -0.97
HDAC1-204ENST00000471488 AGBL3Q8NEM8 1001 aa8.99□□□□□ -0.97
HDAC1-204ENST00000471488 CD99L2Q8TCZ2 262 aa8.99□□□□□ -0.97
HDAC1-204ENST00000471488 MXD3Q9BW11 206 aa8.99□□□□□ -0.97
HDAC1-204ENST00000471488 SEC31BQ9NQW1 1179 aa8.99□□□□□ -0.97
HDAC1-204ENST00000471488 COLQQ9Y215 455 aaPredicted RBP8.99□□□□□ -0.97
HDAC1-204ENST00000471488 DLG5Q8TDM6 1919 aa8.99□□□□□ -0.97
HDAC1-204ENST00000471488 DDX60Q8IY21 1712 aaKnown RBP8.98□□□□□ -0.97
HDAC1-204ENST00000471488 USP17L3A6NCW0 530 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 USP17L4A6NCW7 530 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 ECM2O94769 699 aaPredicted RBP8.98□□□□□ -0.97
HDAC1-204ENST00000471488 RIPK4P57078 832 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 PTPN12Q05209 780 aaKnown RBP8.98□□□□□ -0.97
HDAC1-204ENST00000471488 NEUROD2Q15784 382 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 KRT24Q2M2I5 525 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 SLC4A8Q2Y0W8 1093 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 INTS3Q68E01 1043 aaKnown RBP8.98□□□□□ -0.97
HDAC1-204ENST00000471488 USP17L1Q7RTZ2 530 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 JARID2Q92833 1246 aaPredicted RBP8.98□□□□□ -0.97
HDAC1-204ENST00000471488 SLC10A4Q96EP9 437 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 TMEM106CQ9BVX2 250 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 CHPF2Q9P2E5 772 aa8.98□□□□□ -0.97
HDAC1-204ENST00000471488 ZNF280AP59817 542 aaPredicted RBP8.97□□□□□ -0.97
HDAC1-204ENST00000471488 HDGFL1Q5TGJ6 251 aa8.97□□□□□ -0.97
HDAC1-204ENST00000471488 LRP10Q7Z4F1 713 aa8.97□□□□□ -0.97
HDAC1-204ENST00000471488 RIC3Q7Z5B4 369 aa8.97□□□□□ -0.97
HDAC1-204ENST00000471488 SCN9AQ15858 1988 aa8.97□□□□□ -0.97
HDAC1-204ENST00000471488 LRRC37AA6NMS7 1700 aa8.97□□□□□ -0.97
HDAC1-204ENST00000471488 ALDH1A1P00352 501 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 SF3B3Q15393 1217 aaKnown RBP8.96□□□□□ -0.98
HDAC1-204ENST00000471488 SPRYD7Q5W111 196 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 ANKRD13DQ6ZTN6 518 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 IFNL1Q8IU54 200 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 SLC17A8Q8NDX2 589 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 ERO1AQ96HE7 468 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 PNNQ9H307 717 aaKnown RBP8.96□□□□□ -0.98
HDAC1-204ENST00000471488 EFCC1Q9HA90 598 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 PTPN22Q9Y2R2 807 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 COL4A1P02462 1669 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 PITPNM2Q9BZ72 1349 aa8.96□□□□□ -0.98
HDAC1-204ENST00000471488 MANSC4A6NHS7 340 aaPredicted RBP8.95□□□□□ -0.98
HDAC1-204ENST00000471488 DLL1O00548 723 aa8.95□□□□□ -0.98
HDAC1-204ENST00000471488 WNT10BO00744 389 aa8.95□□□□□ -0.98
HDAC1-204ENST00000471488 CCDC152Q4G0S7 254 aa8.95□□□□□ -0.98
HDAC1-204ENST00000471488 CHRDL2Q6WN34 429 aa8.95□□□□□ -0.98
HDAC1-204ENST00000471488 KIAA0825Q8IV33 1275 aa8.95□□□□□ -0.98
HDAC1-204ENST00000471488 ANKRD18AQ8IVF6 992 aa8.95□□□□□ -0.98
HDAC1-204ENST00000471488 PLBD2Q8NHP8 589 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms