RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 TDRD12Q587J7 1177 aaKnown RBP18.33■□□□□ 0.52
USP42-201ENST00000306177 Q6ZUG5 572 aa18.33■□□□□ 0.52
USP42-201ENST00000306177 ALG1Q9BT22 464 aa18.33■□□□□ 0.52
USP42-201ENST00000306177 UTP14AQ9BVJ6 771 aaKnown RBP18.33■□□□□ 0.52
USP42-201ENST00000306177 NIP7Q9Y221 180 aaKnown RBP eCLIP18.33■□□□□ 0.52
USP42-201ENST00000306177 SMC5Q8IY18 1101 aa18.33■□□□□ 0.52
USP42-201ENST00000306177 KCNG4Q8TDN1 519 aa18.33■□□□□ 0.52
USP42-201ENST00000306177 SIRT1Q96EB6 747 aa18.33■□□□□ 0.52
USP42-201ENST00000306177 ANKRD62A6NC57 917 aa18.33■□□□□ 0.52
USP42-201ENST00000306177 IFIT1BQ5T764 474 aaKnown RBP18.33■□□□□ 0.52
USP42-201ENST00000306177 LRRC27Q9C0I9 530 aa18.33■□□□□ 0.52
USP42-201ENST00000306177 DNAI2Q9GZS0 605 aa18.33■□□□□ 0.52
USP42-201ENST00000306177 SYKP43405 635 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 SLC4A8Q2Y0W8 1093 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 LRSAM1Q6UWE0 723 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 ZNF622Q969S3 477 aaKnown RBP eCLIP18.32■□□□□ 0.521e-6■■□□□ 14.2
USP42-201ENST00000306177 SCLT1Q96NL6 688 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 RTN1Q16799 776 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 TSPY3P0CV98 308 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 TSPY8P0CW00 308 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 MAP9Q49MG5 647 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 DZIP3Q86Y13 1208 aaKnown RBP18.32■□□□□ 0.52
USP42-201ENST00000306177 MCM3P25205 808 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 C8orf37Q96NL8 207 aa18.32■□□□□ 0.52
USP42-201ENST00000306177 CCDC40Q4G0X9 1142 aa18.31■□□□□ 0.52
USP42-201ENST00000306177 NAA16Q6N069 864 aaPredicted RBP18.31■□□□□ 0.52
USP42-201ENST00000306177 TRMT1Q9NXH9 659 aaKnown RBP18.31■□□□□ 0.52
USP42-201ENST00000306177 PCDH11XQ9BZA7 1347 aa18.31■□□□□ 0.52
USP42-201ENST00000306177 PCDH11YQ9BZA8 1340 aa18.31■□□□□ 0.52
USP42-201ENST00000306177 GOLGA6L7A0A1B0GV03 622 aa18.31■□□□□ 0.52
USP42-201ENST00000306177 CETN1Q12798 172 aa18.31■□□□□ 0.52
USP42-201ENST00000306177 IQSEC3Q9UPP2 1182 aaPredicted RBP18.31■□□□□ 0.52
USP42-201ENST00000306177 CNPY2Q9Y2B0 182 aa18.31■□□□□ 0.52
USP42-201ENST00000306177 GIMAP6Q6P9H5 292 aa18.3■□□□□ 0.52
USP42-201ENST00000306177 GOLGA6L9A6NEM1 432 aa18.3■□□□□ 0.52
USP42-201ENST00000306177 GBP2P32456 591 aaPredicted RBP18.3■□□□□ 0.52
USP42-201ENST00000306177 STXBP4Q6ZWJ1 553 aa18.3■□□□□ 0.52
USP42-201ENST00000306177 C16orf45Q96MC5 204 aaPredicted RBP18.3■□□□□ 0.52
USP42-201ENST00000306177 DDX21Q9NR30 783 aaKnown RBP eCLIP18.3■□□□□ 0.52
USP42-201ENST00000306177 RMND1Q9NWS8 449 aa18.3■□□□□ 0.52
USP42-201ENST00000306177 HCLS1P14317 486 aaPredicted RBP18.3■□□□□ 0.52
USP42-201ENST00000306177 PAFAH1B1P43034 410 aa18.3■□□□□ 0.52
USP42-201ENST00000306177 GNAQP50148 359 aa18.3■□□□□ 0.52
USP42-201ENST00000306177 ORAI2Q96SN7 254 aa18.3■□□□□ 0.52
USP42-201ENST00000306177 PTPRTO14522 1441 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 RNF113AO15541 343 aaKnown RBP18.29■□□□□ 0.52
USP42-201ENST00000306177 RRP9O43818 475 aaKnown RBP18.29■□□□□ 0.52
USP42-201ENST00000306177 F13A1P00488 732 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 WDHD1O75717 1129 aaPredicted RBP18.29■□□□□ 0.52
USP42-201ENST00000306177 PPP4R3BQ5MIZ7 849 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 ISM2Q6H9L7 571 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 CCDC150Q8NCX0 1101 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 LUZP1Q86V48 1076 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.29■□□□□ 0.52
USP42-201ENST00000306177 NEO1Q92859 1461 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 G2E3Q7L622 706 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 USP48Q86UV5 1035 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 PLEKHM2Q8IWE5 1019 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 MRPS27Q92552 414 aaKnown RBP18.29■□□□□ 0.52
USP42-201ENST00000306177 NYXQ9GZU5 481 aa18.29■□□□□ 0.52
USP42-201ENST00000306177 PRC1O43663 620 aa18.28■□□□□ 0.52
USP42-201ENST00000306177 NEBLO76041 1014 aa18.28■□□□□ 0.52
USP42-201ENST00000306177 GNAT2P19087 354 aa18.28■□□□□ 0.52
USP42-201ENST00000306177 TCERG1LQ5VWI1 586 aa18.28■□□□□ 0.52
USP42-201ENST00000306177 RAD50Q92878 1312 aa18.28■□□□□ 0.52
USP42-201ENST00000306177 WDR78Q5VTH9 848 aa18.28■□□□□ 0.52
USP42-201ENST00000306177 ZBTB7BO15156 539 aaPredicted RBP18.27■□□□□ 0.52
USP42-201ENST00000306177 TTLL12Q14166 644 aaPredicted RBP18.27■□□□□ 0.52
USP42-201ENST00000306177 ALS2CR12Q96Q35 445 aa18.27■□□□□ 0.52
USP42-201ENST00000306177 TAF3Q5VWG9 929 aa18.27■□□□□ 0.52
USP42-201ENST00000306177 BABAM1Q9NWV8 329 aa18.27■□□□□ 0.52
USP42-201ENST00000306177 MYO1BO43795 1136 aa18.27■□□□□ 0.52
USP42-201ENST00000306177 TRIM35Q9UPQ4 493 aa18.27■□□□□ 0.52
USP42-201ENST00000306177 TARBP1Q13395 1621 aaKnown RBP18.27■□□□□ 0.51
USP42-201ENST00000306177 IRS4O14654 1257 aaPredicted RBP18.27■□□□□ 0.51
USP42-201ENST00000306177 TFCP2Q12800 502 aa18.27■□□□□ 0.51
USP42-201ENST00000306177 ZNF804AQ7Z570 1209 aa18.27■□□□□ 0.51
USP42-201ENST00000306177 EXOC1Q9NV70 894 aa18.27■□□□□ 0.51
USP42-201ENST00000306177 KAT6BQ8WYB5 2073 aa18.26■□□□□ 0.51
USP42-201ENST00000306177 ARHGEF5Q12774 1597 aa18.26■□□□□ 0.51
USP42-201ENST00000306177 MAGEB6P1A0A0J9YX57 407 aa18.26■□□□□ 0.51
USP42-201ENST00000306177 TRAF1Q13077 416 aa18.26■□□□□ 0.51
USP42-201ENST00000306177 CREB3L3Q68CJ9 461 aa18.26■□□□□ 0.51
USP42-201ENST00000306177 ZNF790Q6PG37 636 aa18.26■□□□□ 0.51
USP42-201ENST00000306177 TRIM47Q96LD4 638 aa18.26■□□□□ 0.51
USP42-201ENST00000306177 BICC1Q9H694 974 aaKnown RBP18.26■□□□□ 0.51
USP42-201ENST00000306177 TMEM2Q9UHN6 1383 aa18.26■□□□□ 0.51
USP42-201ENST00000306177 CHL1O00533 1208 aa18.25■□□□□ 0.51
USP42-201ENST00000306177 ERMNQ8TAM6 284 aa18.25■□□□□ 0.51
USP42-201ENST00000306177 CGNQ9P2M7 1197 aaKnown RBP18.25■□□□□ 0.51
USP42-201ENST00000306177 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.25■□□□□ 0.51
USP42-201ENST00000306177 N4BP3O15049 544 aa18.25■□□□□ 0.51
USP42-201ENST00000306177 SNW1Q13573 536 aaKnown RBP18.25■□□□□ 0.51
USP42-201ENST00000306177 BTG4Q9NY30 223 aa18.25■□□□□ 0.51
USP42-201ENST00000306177 GCC2Q8IWJ2 1684 aa18.25■□□□□ 0.51
USP42-201ENST00000306177 ADGBQ8N7X0 1667 aa18.25■□□□□ 0.51
USP42-201ENST00000306177 CHMLP26374 656 aa18.25■□□□□ 0.51
USP42-201ENST00000306177 CALM1P0DP23 149 aa18.25■□□□□ 0.51
USP42-201ENST00000306177 CALM2P0DP24 149 aa18.25■□□□□ 0.51
USP42-201ENST00000306177 CALM3P0DP25 149 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms