RNA–Protein interactions for RNA: YMR118C

SHH3, Transcript of Putative mitochondrial inner membrane protein of unknown function, yeast

Gene SHH3, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHH3	YMR118C	ROM1	P53046	1155 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	NCS2	P53923	493 aa	Predicted RBP	3.76	□□□□□ -1.81
SHH3	YMR118C	YNL011C	P53980	444 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	RPS15	Q01855	142 aa	Known RBP	3.76	□□□□□ -1.81
SHH3	YMR118C	ADA2	Q02336	434 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	SPO19	Q03029	223 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	URH1	Q04179	340 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	UBX2	Q04228	584 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	IMH1	Q06704	911 aa	Known RBP	3.76	□□□□□ -1.81
SHH3	YMR118C	CMS1	Q07897	291 aa	Known RBP	3.76	□□□□□ -1.81
SHH3	YMR118C	MED7	Q08278	222 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	PLP2	Q12017	286 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	DAS2	Q12084	232 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	RIO1	Q12196	484 aa	Known RBP	3.76	□□□□□ -1.81
SHH3	YMR118C	YOR111W	Q99210	232 aa		3.76	□□□□□ -1.81
SHH3	YMR118C	TRP3	P00937	484 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	CHO2	P05374	869 aa	Known RBP	3.75	□□□□□ -1.81
SHH3	YMR118C	GAL2	P13181	574 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	OM45	P16547	393 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	VAN1	P23642	535 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	GRX1	P25373	110 aa	Known RBP	3.75	□□□□□ -1.81
SHH3	YMR118C	RSC6	P25632	483 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	CDC11	P32458	415 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	ANP1	P32629	500 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	UBC6	P33296	250 aa	Predicted RBP	3.75	□□□□□ -1.81
SHH3	YMR118C	RPT3	P33298	428 aa	Known RBP	3.75	□□□□□ -1.81
SHH3	YMR118C	OAF3	P36023	863 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	ERG7	P38604	731 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	GLO3	P38682	493 aa	Known RBP	3.75	□□□□□ -1.81
SHH3	YMR118C	CCT2	P39076	527 aa	Known RBP	3.75	□□□□□ -1.81
SHH3	YMR118C	HOS4	P40480	1083 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	SEC26	P41810	973 aa	Known RBP	3.75	□□□□□ -1.81
SHH3	YMR118C	CCM1	P48237	864 aa	Predicted RBP	3.75	□□□□□ -1.81
SHH3	YMR118C	NNF2	P53253	936 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	BTN2	P53286	410 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	HDA1	P53973	706 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	SEC5	P89102	971 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	GTR1	Q00582	310 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	RPT6	Q01939	405 aa	Known RBP	3.75	□□□□□ -1.81
SHH3	YMR118C	YML119W	Q03208	357 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	SPO75	Q07798	868 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	YOL075C	Q08234	1294 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	TAF10	Q12030	206 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	SLP1	Q12232	587 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	ZRT2	Q12436	422 aa		3.75	□□□□□ -1.81
SHH3	YMR118C	TY4B-P	A0A0B7P3V8	1104 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	CYB2	P00175	591 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	MET6	P05694	767 aa	Known RBP	3.74	□□□□□ -1.81
SHH3	YMR118C	MAK31	P23059	88 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	CLB4	P24871	460 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	RPC53	P25441	422 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	RAD51	P25454	400 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	BUD14	P27637	709 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	DPH5	P32469	300 aa	Predicted RBP	3.74	□□□□□ -1.81
SHH3	YMR118C	LIP5	P32875	414 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	SER1	P33330	395 aa	Known RBP	3.74	□□□□□ -1.81
SHH3	YMR118C	MYO3	P36006	1272 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	YKR073C	P36153	106 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	3.74	□□□□□ -1.81	not detected
SHH3	YMR118C	GIP2	P40036	548 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	CSM2	P40465	213 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	TED1	P40533	473 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	VTC2	P43585	828 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	VPS53	P47061	822 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	RPC17	P47076	161 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	TMA22	P47089	198 aa	Predicted RBP	3.74	□□□□□ -1.81
SHH3	YMR118C	UBA2	P52488	636 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	YGL138C	P53122	345 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	PXR1	P53335	271 aa	Predicted RBP	3.74	□□□□□ -1.81
SHH3	YMR118C	SPC24	Q04477	213 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	YDR341C	Q05506	607 aa	Known RBP	3.74	□□□□□ -1.81
SHH3	YMR118C	CSR1	Q06705	408 aa	Known RBP	3.74	□□□□□ -1.81
SHH3	YMR118C	YLR122C	Q12312	125 aa		3.74	□□□□□ -1.81
SHH3	YMR118C	UTP10	P42945	1769 aa	Known RBP	3.74	□□□□□ -1.81
SHH3	YMR118C	CIT1	P00890	479 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	TUF1	P02992	437 aa	Known RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	YMR085W	P0CF18	432 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	SSB1	P11484	613 aa	Known RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	GCD2	P12754	651 aa	Predicted RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	THR4	P16120	514 aa	Known RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	KAR3	P17119	729 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	PRP4	P20053	465 aa	Known RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	SET5	P38890	526 aa	Known RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	YER156C	P40093	338 aa	Known RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	SSB2	P40150	613 aa	Known RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	YIR042C	P40586	236 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	YNL320W	P42840	284 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	YGR153W	P48238	217 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	SOK2	P53438	785 aa	Predicted RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	TOF1	P53840	1238 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	TFB2	Q02939	513 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	YPL109C	Q02981	657 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	VPS16	Q03308	798 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	PRP42	Q03776	544 aa	Known RBP	3.73	□□□□□ -1.81
SHH3	YMR118C	TRS120	Q04183	1289 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	INM2	Q05533	292 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	ECI1	Q05871	280 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	PIG1	Q06216	648 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	YLR177W	Q06251	628 aa		3.73	□□□□□ -1.81
SHH3	YMR118C	NOB1	Q08444	459 aa	Known RBP	3.73	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 34.1 ms