RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	DOT1	Q04089	582 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	MRD1	Q06106	887 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	TDA5	Q06417	326 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	YCG1	Q06680	1035 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	TRP2	P00899	507 aa	Known RBP	4.85	□□□□□ -1.63
CDC42	YLR229C	SNF3	P10870	884 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	RET1	P22276	1149 aa	Known RBP	4.85	□□□□□ -1.63
CDC42	YLR229C	SWI4	P25302	1093 aa	Known RBP	4.85	□□□□□ -1.63
CDC42	YLR229C	NFS1	P25374	497 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	LYP1	P32487	611 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	SRP40	P32583	406 aa	Predicted RBP	4.85	□□□□□ -1.63
CDC42	YLR229C	YEL043W	P32618	956 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	SFA1	P32771	386 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	RDH54	P38086	958 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	MCM7	P38132	845 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	RFT1	P38206	574 aa	Predicted RBP	4.85	□□□□□ -1.63
CDC42	YLR229C	RPN10	P38886	268 aa	Known RBP	4.85	□□□□□ -1.63
CDC42	YLR229C	YPT11	P48559	417 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	YGR053C	P53234	283 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	ROD1	Q02805	837 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	COG4	Q06096	861 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	TFC6	Q06339	672 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	TDA6	Q06466	467 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	GRX6	Q12438	231 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	YOR131C	Q12486	218 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	PTC5	Q12511	572 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	FIG2	P25653	1609 aa		4.85	□□□□□ -1.63
CDC42	YLR229C	GPA1	P08539	472 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	MAK31	P23059	88 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	MKK2	P32491	506 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	YKL222C	P35995	705 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	NNK1	P36003	928 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	MYO3	P36006	1272 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	YKT6	P36015	200 aa	Known RBP	4.84	□□□□□ -1.63
CDC42	YLR229C	ERT1	P38140	529 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	MAL31	P38156	614 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	CAJ1	P39101	391 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	YER130C	P39959	443 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	CNN1	P43618	361 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	ALG2	P43636	503 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	PRP31	P49704	494 aa	Predicted RBP	4.84	□□□□□ -1.63
CDC42	YLR229C	ELA1	P53861	379 aa	Predicted RBP	4.84	□□□□□ -1.63
CDC42	YLR229C	HDA1	P53973	706 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	PRP42	Q03776	544 aa	Known RBP	4.84	□□□□□ -1.63
CDC42	YLR229C	OPI10	Q08202	246 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	YPL260W	Q08977	551 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	DCS2	Q12123	353 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	YOL098C	Q12496	1037 aa		4.84	□□□□□ -1.63
CDC42	YLR229C	PMD1	P32634	1753 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	RPL22A	P05749	121 aa	Known RBP	4.83	□□□□□ -1.64
CDC42	YLR229C	DUT1	P33317	147 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	TAT1	P38085	619 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	VPS41	P38959	992 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	MSH4	P40965	878 aa	Predicted RBP	4.83	□□□□□ -1.64
CDC42	YLR229C	GSM1	P42950	618 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	HNT2	P49775	206 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	YGR045C	P53229	120 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	NAN1	Q02931	896 aa	Known RBP	4.83	□□□□□ -1.64
CDC42	YLR229C	YMR187C	Q03236	431 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	HRK1	Q08732	759 aa	Known RBP	4.83	□□□□□ -1.64
CDC42	YLR229C	TY1A-NL1	Q12391	440 aa	Known RBP	4.83	□□□□□ -1.64
CDC42	YLR229C	YPR053C	Q6Q5F3	151 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	YOL087C	Q99247	1116 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	RAD61	Q99359	647 aa		4.83	□□□□□ -1.64
CDC42	YLR229C	FAS2	P19097	1887 aa	Known RBP	4.82	□□□□□ -1.64
CDC42	YLR229C	CTT1	P06115	562 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	CDC6	P09119	513 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	HEM13	P11353	328 aa	Known RBP	4.82	□□□□□ -1.64
CDC42	YLR229C	RNR3	P21672	869 aa	Known RBP	4.82	□□□□□ -1.64
CDC42	YLR229C	STE11	P23561	717 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	RIT1	P23796	513 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	DPB3	P27344	201 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	GSY2	P27472	705 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	YKU70	P32807	602 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	NFU1	P32860	256 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
CDC42	YLR229C	YKL107W	P34251	309 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	ALG3	P38179	458 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	RXT2	P38255	430 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	MCX1	P38323	520 aa	Predicted RBP	4.82	□□□□□ -1.64
CDC42	YLR229C	OCA5	P38738	679 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	ECM1	P39715	212 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	VID27	P40157	782 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	OSW7	P43611	510 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	MAL13	P53338	473 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	SSL2	Q00578	843 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	VMS1	Q04311	632 aa	Known RBP	4.82	□□□□□ -1.64
CDC42	YLR229C	RBA50	Q04418	439 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	MYO5	Q04439	1219 aa	Known RBP	4.82	□□□□□ -1.64
CDC42	YLR229C	OMS1	Q06668	471 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	SPO75	Q07798	868 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	CDC53	Q12018	815 aa	Known RBP	4.82	□□□□□ -1.64
CDC42	YLR229C	GET3	Q12154	354 aa	Known RBP	4.82	□□□□□ -1.64
CDC42	YLR229C	REC8	Q12188	680 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	CEX1	Q12453	761 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	RKM4	Q12504	494 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	YOR111W	Q99210	232 aa		4.82	□□□□□ -1.64
CDC42	YLR229C	AI3	P03877	415 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	ARD1	P07347	238 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	INO1	P11986	533 aa		4.81	□□□□□ -1.64

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