RNA–Protein interactions for RNA: YLR086W

SMC4, Transcript of Subunit of the condensin complex, yeast

Gene SMC4, Length 4,257 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC4	YLR086W	GUD1	Q07729	489 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	YOR378W	Q08902	515 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	SLX4	Q12098	748 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	SPE1	P08432	466 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	HOP1	P20050	605 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	STE11	P23561	717 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	CYS3	P31373	394 aa	Known RBP	1.76	□□□□□ -2.13
SMC4	YLR086W	COQ2	P32378	372 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	SIC1	P38634	284 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	DSS1	P39112	969 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	PRY1	P47032	299 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	ECL1	P48235	211 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	RTS3	P53289	263 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	SSY1	Q03770	852 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	PSR2	Q07949	397 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	DCS2	Q12123	353 aa		1.76	□□□□□ -2.13
SMC4	YLR086W	HMG1	P12683	1054 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	1.75	□□□□□ -2.13	not detected
SMC4	YLR086W	PSP2	P50109	593 aa	Known RBP	1.75	□□□□□ -2.13
SMC4	YLR086W	PCL10	P53124	433 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	SNO2	P53823	222 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	ASI2	P53895	289 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	SFB2	P53953	876 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	NSE5	Q03718	556 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	VMS1	Q04311	632 aa	Known RBP	1.75	□□□□□ -2.13
SMC4	YLR086W	XYL2	Q07993	356 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	HMI1	Q12039	706 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	DIF1	O13577	133 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	SOD2	P00447	233 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	NAM7	P30771	971 aa	Known RBP	1.75	□□□□□ -2.13
SMC4	YLR086W	OAF3	P36023	863 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	IES1	P43579	692 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	INP52	P50942	1183 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	ERG5	P54781	538 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	SGD1	Q06132	899 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	MCM21	Q06675	368 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	PEX15	Q08215	383 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	PUS1	Q12211	544 aa	Known RBP	1.75	□□□□□ -2.13
SMC4	YLR086W	DAL7	P21826	554 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	PLC1	P32383	869 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	MF(ALPHA)2	P32435	120 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	SEC6	P32844	805 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	BAP3	P41815	604 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	FOL1	P53848	824 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	HLR1	Q04429	423 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	EIS1	Q05050	843 aa	Known RBP	1.75	□□□□□ -2.13
SMC4	YLR086W	YPL277C	Q08989	487 aa		1.75	□□□□□ -2.13
SMC4	YLR086W	FAP7	Q12055	197 aa	Predicted RBP	1.75	□□□□□ -2.13
SMC4	YLR086W	GCD1	P09032	578 aa	Predicted RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	BIK1	P11709	440 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	HSP78	P33416	811 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	AKL1	P38080	1108 aa	Known RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	PTC7	P38797	343 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	NIT1	P40447	199 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	RSC8	P43609	557 aa	Known RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	CTH1	P47976	325 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	EXG2	P52911	562 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	UBX4	P54730	416 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	TRI1	Q05024	226 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	DCG1	P32460	244 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	ELM1	P32801	640 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	APL2	P36000	726 aa	Predicted RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	ERT1	P38140	529 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	YBR259W	P38338	688 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	BIT2	P38346	545 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	SRP68	P38687	599 aa	Known RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	LAM1	P38851	1228 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	ALY2	P47029	1046 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	DUS1	P53759	423 aa	Known RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	LRS4	Q04087	347 aa	Known RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	1.74	□□□□□ -2.13	not detected
SMC4	YLR086W	YLR149C	Q99296	730 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	NUP145	P49687	1317 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	PIF1	P07271	859 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	TUB3	P09734	445 aa	Known RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	RFA1	P22336	621 aa	Known RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	YLF2	P38746	405 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	AKR1	P39010	764 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	FOL2	P51601	243 aa	Known RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	PIP2	P52960	996 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	SLD3	P53135	668 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	YGR021W	P53212	290 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	ARG5,6	Q01217	863 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	MLC2	Q06580	163 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	TPO1	Q07824	586 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	TRM11	Q12463	433 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	RMP1	Q12530	201 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	RAD18	P10862	487 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	SST2	P11972	698 aa	Known RBP	1.74	□□□□□ -2.13
SMC4	YLR086W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	1.74	□□□□□ -2.13	not detected
SMC4	YLR086W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	1.74	□□□□□ -2.13	not detected
SMC4	YLR086W	APL1	P27351	700 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	CTF13	P35203	478 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	YKR073C	P36153	106 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	YHR078W	P38799	552 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	MEF2	P39677	819 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	RAD26	P40352	1085 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	IRC5	P43610	853 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	GCN5	Q03330	439 aa		1.74	□□□□□ -2.13
SMC4	YLR086W	BRE1	Q07457	700 aa	Known RBP	1.74	□□□□□ -2.13

Retrieved 100 of 5,963 RNA–protein pairs in 9.8 ms