RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE2	YKL130C	IRC13	Q08630	104 aa		3.21	□□□□□ -1.9
SHE2	YKL130C	AFT2	Q08957	416 aa		3.21	□□□□□ -1.9
SHE2	YKL130C	HAL9	Q12180	1030 aa		3.21	□□□□□ -1.9
SHE2	YKL130C	SCT1	P32784	759 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	STE5	P32917	917 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	HIS7	P33734	552 aa	Known RBP	3.2	□□□□□ -1.9
SHE2	YKL130C	YBR184W	P38299	523 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	SAK1	P38990	1142 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	SPF1	P39986	1215 aa	Known RBP	3.2	□□□□□ -1.9
SHE2	YKL130C	YIL166C	P40445	542 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	YIR042C	P40586	236 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	ALR2	P43553	858 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	HOF1	Q05080	669 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	COQ11	Q05892	277 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	YNL162W-A	Q3E7A8	72 aa		3.2	□□□□□ -1.9
SHE2	YKL130C	ILV6	P25605	309 aa	Known RBP	3.19	□□□□□ -1.9
SHE2	YKL130C	SSY5	P47002	699 aa		3.19	□□□□□ -1.9
SHE2	YKL130C	HSV2	P50079	448 aa	Predicted RBP	3.19	□□□□□ -1.9
SHE2	YKL130C	SSL2	Q00578	843 aa		3.19	□□□□□ -1.9
SHE2	YKL130C	MUS81	Q04149	632 aa	Predicted RBP	3.19	□□□□□ -1.9
SHE2	YKL130C	FPR4	Q06205	392 aa	Predicted RBP	3.19	□□□□□ -1.9
SHE2	YKL130C	YOR022C	Q12204	715 aa		3.19	□□□□□ -1.9
SHE2	YKL130C	YLR415C	O13578	112 aa		3.18	□□□□□ -1.9
SHE2	YKL130C	PRC1	P00729	532 aa		3.18	□□□□□ -1.9
SHE2	YKL130C	DMC1	P25453	334 aa		3.18	□□□□□ -1.9
SHE2	YKL130C	FLO10	P36170	1169 aa		3.18	□□□□□ -1.9
SHE2	YKL130C	GGA2	P38817	585 aa	Known RBP	3.18	□□□□□ -1.9
SHE2	YKL130C	PFD1	P46988	109 aa		3.18	□□□□□ -1.9
SHE2	YKL130C	NIT3	P49954	291 aa		3.18	□□□□□ -1.9
SHE2	YKL130C	NOG2	P53742	486 aa	Known RBP	3.18	□□□□□ -1.9
SHE2	YKL130C	ALD6	P54115	500 aa	Known RBP	3.18	□□□□□ -1.9
SHE2	YKL130C	SGO1	Q08490	590 aa		3.18	□□□□□ -1.9
SHE2	YKL130C	ENV7	Q12003	364 aa		3.18	□□□□□ -1.9
SHE2	YKL130C	LAT1	P12695	482 aa	Known RBP	3.17	□□□□□ -1.9
SHE2	YKL130C	DAL7	P21826	554 aa		3.17	□□□□□ -1.9
SHE2	YKL130C	PET10	P36139	283 aa		3.17	□□□□□ -1.9
SHE2	YKL130C	PFA3	P42836	336 aa		3.17	□□□□□ -1.9
SHE2	YKL130C	DAM1	P53267	343 aa		3.17	□□□□□ -1.9
SHE2	YKL130C	THI7	Q05998	598 aa		3.17	□□□□□ -1.9
SHE2	YKL130C	ARO10	Q06408	635 aa		3.17	□□□□□ -1.9
SHE2	YKL130C	RSC3	Q06639	885 aa		3.17	□□□□□ -1.9
SHE2	YKL130C	UBX5	Q06682	500 aa		3.17	□□□□□ -1.9
SHE2	YKL130C	MSD1	P15179	658 aa	Known RBP	3.16	□□□□□ -1.9
SHE2	YKL130C	ADY2	P25613	283 aa		3.16	□□□□□ -1.9
SHE2	YKL130C	SAP190	P36123	1033 aa		3.16	□□□□□ -1.9
SHE2	YKL130C	BCD1	P38772	366 aa		3.16	□□□□□ -1.9
SHE2	YKL130C	FMP52	P40008	231 aa		3.16	□□□□□ -1.9
SHE2	YKL130C	FMP25	Q08023	583 aa		3.16	□□□□□ -1.9
SHE2	YKL130C	YAP7	Q08182	245 aa		3.16	□□□□□ -1.9
SHE2	YKL130C	YOL098C	Q12496	1037 aa		3.16	□□□□□ -1.9
SHE2	YKL130C	SPO11	P23179	398 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	BRN1	P38170	754 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	YJL206C	P39529	758 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	TEL2	P53038	688 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	UTP8	P53276	713 aa	Known RBP	3.15	□□□□□ -1.91
SHE2	YKL130C	DOS2	P54858	310 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	APM1	Q00776	475 aa	Predicted RBP	3.15	□□□□□ -1.91
SHE2	YKL130C	ASM4	Q05166	528 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	EAF1	Q06337	982 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	TGL5	Q12043	749 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	ICT1	Q12385	394 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	HBN1	Q96VH4	193 aa		3.15	□□□□□ -1.91
SHE2	YKL130C	TOP3	P13099	656 aa		3.14	□□□□□ -1.91
SHE2	YKL130C	YCL002C	P25565	263 aa		3.14	□□□□□ -1.91
SHE2	YKL130C	ARE1	P25628	610 aa		3.14	□□□□□ -1.91
SHE2	YKL130C	NMD2	P38798	1089 aa	Known RBP	3.14	□□□□□ -1.91
SHE2	YKL130C	YJL049W	P47048	450 aa		3.14	□□□□□ -1.91
SHE2	YKL130C	TAD1	P53065	400 aa		3.14	□□□□□ -1.91
SHE2	YKL130C	SMX3	P54999	86 aa	Predicted RBP	3.14	□□□□□ -1.91
SHE2	YKL130C	LRS4	Q04087	347 aa	Known RBP	3.14	□□□□□ -1.91
SHE2	YKL130C	SPO75	Q07798	868 aa		3.14	□□□□□ -1.91
SHE2	YKL130C	WRS1	Q12109	432 aa	Known RBP	3.14	□□□□□ -1.91
SHE2	YKL130C	REV7	P38927	245 aa		3.13	□□□□□ -1.91
SHE2	YKL130C	HOS4	P40480	1083 aa		3.13	□□□□□ -1.91
SHE2	YKL130C	OSW7	P43611	510 aa		3.13	□□□□□ -1.91
SHE2	YKL130C	MTR3	P48240	250 aa	Predicted RBP	3.13	□□□□□ -1.91
SHE2	YKL130C	UBC11	P52492	156 aa		3.13	□□□□□ -1.91
SHE2	YKL130C	ERP6	P53198	216 aa		3.13	□□□□□ -1.91
SHE2	YKL130C	ATG11	Q12527	1178 aa		3.13	□□□□□ -1.91
SHE2	YKL130C	RPL8B	P29453	256 aa	Known RBP	3.12	□□□□□ -1.91
SHE2	YKL130C	SRP40	P32583	406 aa	Predicted RBP	3.12	□□□□□ -1.91
SHE2	YKL130C	SIC1	P38634	284 aa		3.12	□□□□□ -1.91
SHE2	YKL130C	GLO1	P50107	326 aa		3.12	□□□□□ -1.91
SHE2	YKL130C	YAP1802	P53309	568 aa		3.12	□□□□□ -1.91
SHE2	YKL130C	IOC4	Q04213	475 aa		3.12	□□□□□ -1.91
SHE2	YKL130C	GRX1	P25373	110 aa	Known RBP	3.11	□□□□□ -1.91
SHE2	YKL130C	HIR1	P32479	840 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	TMT1	P32643	299 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	EMC3	P36039	253 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	YBR259W	P38338	688 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	SET5	P38890	526 aa	Known RBP	3.11	□□□□□ -1.91
SHE2	YKL130C	NDC80	P40460	691 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	SHR5	P41912	237 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	CCT7	P42943	550 aa	Known RBP	3.11	□□□□□ -1.91
SHE2	YKL130C	SEC5	P89102	971 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	GAD1	Q04792	585 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	THI21	Q08975	551 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	TAF3	Q12297	353 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	OSH2	Q12451	1283 aa		3.11	□□□□□ -1.91
SHE2	YKL130C	STI1	P15705	589 aa	Known RBP RIP-Chip data	3.1	□□□□□ -1.91	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 36.1 ms