RNA–Protein interactions for RNA: YEL005C

VAB2, Transcript of Subunit of the BLOC-1 complex involved in endosomal maturation, yeast

Gene VAB2, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAB2	YEL005C	YGL081W	P53156	320 aa		4.29	□□□□□ -1.72
VAB2	YEL005C	SDA1	P53313	767 aa	Known RBP	4.29	□□□□□ -1.72
VAB2	YEL005C	RAD18	P10862	487 aa		4.28	□□□□□ -1.72
VAB2	YEL005C	CRP1	P38845	465 aa	Known RBP	4.28	□□□□□ -1.72
VAB2	YEL005C	MSS4	P38994	779 aa		4.28	□□□□□ -1.72
VAB2	YEL005C	MET12	P46151	657 aa		4.28	□□□□□ -1.72
VAB2	YEL005C	CRR1	Q05790	422 aa		4.28	□□□□□ -1.72
VAB2	YEL005C	YOR022C	Q12204	715 aa		4.28	□□□□□ -1.72
VAB2	YEL005C	NUP145	P49687	1317 aa		4.27	□□□□□ -1.73
VAB2	YEL005C	PMA1	P05030	918 aa	Known RBP	4.27	□□□□□ -1.73
VAB2	YEL005C	HIS5	P07172	385 aa		4.27	□□□□□ -1.73
VAB2	YEL005C	CDC6	P09119	513 aa		4.27	□□□□□ -1.73
VAB2	YEL005C	RPL8A	P17076	256 aa	Known RBP	4.27	□□□□□ -1.73
VAB2	YEL005C	EMC1	P25574	760 aa		4.27	□□□□□ -1.73
VAB2	YEL005C	MTC2	P34246	357 aa		4.27	□□□□□ -1.73
VAB2	YEL005C	YFL052W	P43551	465 aa		4.27	□□□□□ -1.73
VAB2	YEL005C	DNM1	P54861	757 aa		4.27	□□□□□ -1.73
VAB2	YEL005C	LRS4	Q04087	347 aa	Known RBP	4.27	□□□□□ -1.73
VAB2	YEL005C	SSL1	Q04673	461 aa	Predicted RBP	4.27	□□□□□ -1.73
VAB2	YEL005C	NOP12	Q08208	459 aa	Known RBP	4.27	□□□□□ -1.73
VAB2	YEL005C	YCL002C	P25565	263 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	YEL1	P34225	687 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	CAF16	P43569	289 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	DUS1	P53759	423 aa	Known RBP	4.26	□□□□□ -1.73
VAB2	YEL005C	YNL193W	P53870	558 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	HDA1	P53973	706 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	SNP1	Q00916	300 aa	Predicted RBP	4.26	□□□□□ -1.73
VAB2	YEL005C	YAP6	Q03935	383 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	COG8	Q04632	607 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	URN1	Q06525	465 aa	Known RBP	4.26	□□□□□ -1.73
VAB2	YEL005C	ADY3	Q07732	790 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	HMI1	Q12039	706 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	HAL9	Q12180	1030 aa		4.26	□□□□□ -1.73
VAB2	YEL005C	TSR4	P25040	408 aa		4.25	□□□□□ -1.73
VAB2	YEL005C	HOG1	P32485	435 aa		4.25	□□□□□ -1.73
VAB2	YEL005C	DEF1	P35732	738 aa	Known RBP	4.25	□□□□□ -1.73
VAB2	YEL005C	MCD4	P36051	919 aa		4.25	□□□□□ -1.73
VAB2	YEL005C	PZF1	P39933	429 aa		4.25	□□□□□ -1.73
VAB2	YEL005C	ATF1	P40353	525 aa		4.25	□□□□□ -1.73
VAB2	YEL005C	PMT3	P47190	753 aa		4.25	□□□□□ -1.73
VAB2	YEL005C	NPY1	P53164	384 aa		4.25	□□□□□ -1.73
VAB2	YEL005C	NHX1	Q04121	633 aa		4.25	□□□□□ -1.73
VAB2	YEL005C	NGG1	P32494	702 aa		4.24	□□□□□ -1.73
VAB2	YEL005C	MOH1	P38191	138 aa		4.24	□□□□□ -1.73
VAB2	YEL005C	HSL7	P38274	827 aa		4.24	□□□□□ -1.73
VAB2	YEL005C	YHR078W	P38799	552 aa		4.24	□□□□□ -1.73
VAB2	YEL005C	VPS62	P53285	467 aa		4.24	□□□□□ -1.73
VAB2	YEL005C	LGE1	Q02796	332 aa	Known RBP	4.24	□□□□□ -1.73
VAB2	YEL005C	WHI4	Q07655	649 aa	Known RBP	4.24	□□□□□ -1.73
VAB2	YEL005C	SWM1	Q12379	170 aa		4.24	□□□□□ -1.73
VAB2	YEL005C	YBR182C-A	Q8TGU6	64 aa		4.24	□□□□□ -1.73
VAB2	YEL005C	SFL1	P20134	766 aa		4.23	□□□□□ -1.73
VAB2	YEL005C	CAD1	P24813	409 aa	Known RBP	4.23	□□□□□ -1.73
VAB2	YEL005C	SDP1	P40479	209 aa		4.23	□□□□□ -1.73
VAB2	YEL005C	URM1	P40554	99 aa	Predicted RBP	4.23	□□□□□ -1.73
VAB2	YEL005C	MTR3	P48240	250 aa	Predicted RBP	4.23	□□□□□ -1.73
VAB2	YEL005C	YGR237C	P50089	785 aa		4.23	□□□□□ -1.73
VAB2	YEL005C	PKH1	Q03407	766 aa		4.23	□□□□□ -1.73
VAB2	YEL005C	YLR224W	Q05947	369 aa		4.23	□□□□□ -1.73
VAB2	YEL005C	GUD1	Q07729	489 aa		4.23	□□□□□ -1.73
VAB2	YEL005C	GUP2	Q08929	609 aa		4.23	□□□□□ -1.73
VAB2	YEL005C	NPC2	Q12408	173 aa		4.23	□□□□□ -1.73
VAB2	YEL005C	PCL2	P25693	308 aa		4.22	□□□□□ -1.73
VAB2	YEL005C	OAR1	P35731	278 aa		4.22	□□□□□ -1.73
VAB2	YEL005C	SSY5	P47002	699 aa		4.22	□□□□□ -1.73
VAB2	YEL005C	YBP2	P53169	641 aa		4.22	□□□□□ -1.73
VAB2	YEL005C	YNR029C	P53729	429 aa	Known RBP	4.22	□□□□□ -1.73
VAB2	YEL005C	THI73	Q07904	523 aa		4.22	□□□□□ -1.73
VAB2	YEL005C	UPC2	Q12151	913 aa		4.22	□□□□□ -1.73
VAB2	YEL005C	DCG1	P32460	244 aa		4.21	□□□□□ -1.74
VAB2	YEL005C	CTF8	P38877	133 aa		4.21	□□□□□ -1.74
VAB2	YEL005C	SAK1	P38990	1142 aa		4.21	□□□□□ -1.74
VAB2	YEL005C	PLB1	P39105	664 aa		4.21	□□□□□ -1.74
VAB2	YEL005C	BFA1	P47113	574 aa		4.21	□□□□□ -1.74
VAB2	YEL005C	UME1	Q03010	460 aa		4.21	□□□□□ -1.74
VAB2	YEL005C	RPN7	Q06103	429 aa	Known RBP	4.21	□□□□□ -1.74
VAB2	YEL005C	FAP7	Q12055	197 aa	Predicted RBP	4.21	□□□□□ -1.74
VAB2	YEL005C	GIN4	Q12263	1142 aa		4.21	□□□□□ -1.74
VAB2	YEL005C	CHA4	P43634	648 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	TY4A-J	P47023	414 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	UBA2	P52488	636 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	ZIP2	P53061	704 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	NCS6	P53088	359 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	AIM14	P53109	570 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	ORC4	P54791	529 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	PEX19	Q07418	342 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	YLR001C	Q07895	862 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	THI21	Q08975	551 aa		4.2	□□□□□ -1.74
VAB2	YEL005C	FBP1	P09201	348 aa		4.19	□□□□□ -1.74
VAB2	YEL005C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
VAB2	YEL005C	PRP19	P32523	503 aa	Known RBP	4.19	□□□□□ -1.74
VAB2	YEL005C	TYS1	P36421	394 aa	Known RBP	4.19	□□□□□ -1.74
VAB2	YEL005C	PCM1	P38628	557 aa	Known RBP	4.19	□□□□□ -1.74
VAB2	YEL005C	YEN1	P40028	759 aa		4.19	□□□□□ -1.74
VAB2	YEL005C	MGS1	P40151	587 aa		4.19	□□□□□ -1.74
VAB2	YEL005C	VHR1	P40522	640 aa		4.19	□□□□□ -1.74
VAB2	YEL005C	BNA2	P47125	453 aa		4.19	□□□□□ -1.74
VAB2	YEL005C	HXT16	P47185	567 aa		4.19	□□□□□ -1.74
VAB2	YEL005C	MET13	P53128	600 aa		4.19	□□□□□ -1.74
VAB2	YEL005C	HFD1	Q04458	532 aa		4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 62.6 ms