RNA–Protein interactions for RNA: YDL139C

SCM3, Transcript of Nonhistone component of centromeric chromatin, yeast

Gene SCM3, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SCM3	YDL139C	RFC5	P38251	354 aa		5.83	□□□□□ -1.48
SCM3	YDL139C	EAF7	P53911	425 aa	Known RBP	5.83	□□□□□ -1.48
SCM3	YDL139C	EST2	Q06163	884 aa		5.83	□□□□□ -1.48
SCM3	YDL139C	PTC5	Q12511	572 aa		5.83	□□□□□ -1.48
SCM3	YDL139C	FKS1	P38631	1876 aa	Known RBP	5.82	□□□□□ -1.48
SCM3	YDL139C	TRP2	P00899	507 aa	Known RBP	5.82	□□□□□ -1.48
SCM3	YDL139C	BAS1	P22035	811 aa		5.82	□□□□□ -1.48
SCM3	YDL139C	CHS3	P29465	1165 aa		5.82	□□□□□ -1.48
SCM3	YDL139C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	5.82	□□□□□ -1.48	not detected
SCM3	YDL139C	WHI3	P34761	661 aa	Known RBP	5.82	□□□□□ -1.48
SCM3	YDL139C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	5.82	□□□□□ -1.48	not detected
SCM3	YDL139C	PSY4	P38193	441 aa		5.82	□□□□□ -1.48
SCM3	YDL139C	REI1	P38344	393 aa	Predicted RBP	5.82	□□□□□ -1.48
SCM3	YDL139C	OSH3	P38713	996 aa	Known RBP	5.82	□□□□□ -1.48
SCM3	YDL139C	TAT2	P38967	592 aa		5.82	□□□□□ -1.48
SCM3	YDL139C	VID27	P40157	782 aa		5.82	□□□□□ -1.48
SCM3	YDL139C	HST1	P53685	503 aa		5.82	□□□□□ -1.48
SCM3	YDL139C	ARP5	P53946	755 aa		5.82	□□□□□ -1.48
SCM3	YDL139C	TDA5	Q06417	326 aa	Known RBP	5.82	□□□□□ -1.48
SCM3	YDL139C	BRE4	Q07660	1125 aa		5.82	□□□□□ -1.48
SCM3	YDL139C	GPA1	P08539	472 aa		5.81	□□□□□ -1.48
SCM3	YDL139C	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.81	□□□□□ -1.48	not detected
SCM3	YDL139C	RIT1	P23796	513 aa		5.81	□□□□□ -1.48
SCM3	YDL139C	MKK2	P32491	506 aa		5.81	□□□□□ -1.48
SCM3	YDL139C	RPN12	P32496	274 aa		5.81	□□□□□ -1.48
SCM3	YDL139C	NPR3	P38742	1146 aa		5.81	□□□□□ -1.48
SCM3	YDL139C	SPF1	P39986	1215 aa	Known RBP	5.81	□□□□□ -1.48
SCM3	YDL139C	LYS14	P40971	790 aa		5.81	□□□□□ -1.48
SCM3	YDL139C	SDH1	Q00711	640 aa		5.81	□□□□□ -1.48
SCM3	YDL139C	MYO5	Q04439	1219 aa	Known RBP	5.81	□□□□□ -1.48
SCM3	YDL139C	ESC2	Q06340	456 aa		5.81	□□□□□ -1.48
SCM3	YDL139C	SUP35	P05453	685 aa	Known RBP	5.8	□□□□□ -1.48
SCM3	YDL139C	MET6	P05694	767 aa	Known RBP	5.8	□□□□□ -1.48
SCM3	YDL139C	PIF1	P07271	859 aa		5.8	□□□□□ -1.48
SCM3	YDL139C	GCD1	P09032	578 aa	Predicted RBP	5.8	□□□□□ -1.48
SCM3	YDL139C	SAM2	P19358	384 aa	Known RBP	5.8	□□□□□ -1.48
SCM3	YDL139C	LYP1	P32487	611 aa		5.8	□□□□□ -1.48
SCM3	YDL139C	ADD66	P36040	267 aa		5.8	□□□□□ -1.48
SCM3	YDL139C	UGA2	P38067	497 aa		5.8	□□□□□ -1.48
SCM3	YDL139C	KEL1	P38853	1164 aa	Known RBP	5.8	□□□□□ -1.48
SCM3	YDL139C	CRG1	P38892	291 aa	RIP-Chip data	5.8	□□□□□ -1.48	not detected
SCM3	YDL139C	SPO22	P40511	975 aa		5.8	□□□□□ -1.48
SCM3	YDL139C	PCI8	P40512	444 aa		5.8	□□□□□ -1.48
SCM3	YDL139C	MMM1	P41800	426 aa		5.8	□□□□□ -1.48
SCM3	YDL139C	YJL049W	P47048	450 aa		5.8	□□□□□ -1.48
SCM3	YDL139C	TYW3	P53177	273 aa		5.8	□□□□□ -1.48
SCM3	YDL139C	SPN1	Q06505	410 aa	Predicted RBP	5.8	□□□□□ -1.48
SCM3	YDL139C	DIB1	Q06819	143 aa	Predicted RBP	5.8	□□□□□ -1.48
SCM3	YDL139C	TUB2	P02557	457 aa	Known RBP	5.79	□□□□□ -1.48
SCM3	YDL139C	KRS1	P15180	591 aa	Known RBP	5.79	□□□□□ -1.48
SCM3	YDL139C	YKU70	P32807	602 aa		5.79	□□□□□ -1.48
SCM3	YDL139C	ERG7	P38604	731 aa		5.79	□□□□□ -1.48
SCM3	YDL139C	YER130C	P39959	443 aa		5.79	□□□□□ -1.48
SCM3	YDL139C	YKE2	P52553	114 aa		5.79	□□□□□ -1.48
SCM3	YDL139C	YNR063W	P53749	607 aa		5.79	□□□□□ -1.48
SCM3	YDL139C	PRP42	Q03776	544 aa	Known RBP	5.79	□□□□□ -1.48
SCM3	YDL139C	CYB2	P00175	591 aa		5.78	□□□□□ -1.48
SCM3	YDL139C	HSP82	P02829	709 aa	Known RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.78	□□□□□ -1.48	not detected
SCM3	YDL139C	ABD1	P32783	436 aa	Predicted RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	MOT2	P34909	587 aa	Known RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	SEA4	P38164	1038 aa		5.78	□□□□□ -1.48
SCM3	YDL139C	RTS1	P38903	757 aa		5.78	□□□□□ -1.48
SCM3	YDL139C	NUG1	P40010	520 aa	Known RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	HYR1	P40581	163 aa	Known RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	MSH4	P40965	878 aa	Predicted RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	ELA1	P53861	379 aa	Predicted RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	TIF35	Q04067	274 aa	Known RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	YLR225C	Q05948	407 aa	Known RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	KEL3	Q08979	651 aa	Predicted RBP	5.78	□□□□□ -1.48
SCM3	YDL139C	RAD61	Q99359	647 aa		5.78	□□□□□ -1.48
SCM3	YDL139C	CTT1	P06115	562 aa		5.77	□□□□□ -1.49
SCM3	YDL139C	RPS4A	P0CX35	261 aa	Known RBP	5.77	□□□□□ -1.49
SCM3	YDL139C	RPS4B	P0CX36	261 aa	Known RBP	5.77	□□□□□ -1.49
SCM3	YDL139C	MAK31	P23059	88 aa		5.77	□□□□□ -1.49
SCM3	YDL139C	SYP1	P25623	870 aa	Known RBP	5.77	□□□□□ -1.49
SCM3	YDL139C	YKL091C	P33324	310 aa	Known RBP	5.77	□□□□□ -1.49
SCM3	YDL139C	YKL222C	P35995	705 aa		5.77	□□□□□ -1.49
SCM3	YDL139C	YHL017W	P38745	532 aa		5.77	□□□□□ -1.49
SCM3	YDL139C	CCT5	P40413	562 aa	Known RBP	5.77	□□□□□ -1.49
SCM3	YDL139C	CIT3	P43635	486 aa		5.77	□□□□□ -1.49
SCM3	YDL139C	YGR045C	P53229	120 aa		5.77	□□□□□ -1.49
SCM3	YDL139C	TRM44	Q02648	567 aa	Known RBP	5.77	□□□□□ -1.49
SCM3	YDL139C	NAN1	Q02931	896 aa	Known RBP	5.77	□□□□□ -1.49
SCM3	YDL139C	EAR1	Q03212	550 aa		5.77	□□□□□ -1.49
SCM3	YDL139C	RKM2	Q03942	479 aa		5.77	□□□□□ -1.49
SCM3	YDL139C	YOL075C	Q08234	1294 aa		5.77	□□□□□ -1.49
SCM3	YDL139C	CDC53	Q12018	815 aa	Known RBP	5.77	□□□□□ -1.49
SCM3	YDL139C	ELM1	P32801	640 aa		5.76	□□□□□ -1.49
SCM3	YDL139C	RXT2	P38255	430 aa		5.76	□□□□□ -1.49
SCM3	YDL139C	YAR028W	P39548	234 aa		5.76	□□□□□ -1.49
SCM3	YDL139C	AVT1	P47082	602 aa		5.76	□□□□□ -1.49
SCM3	YDL139C	ASE1	P50275	885 aa		5.76	□□□□□ -1.49
SCM3	YDL139C	PIP2	P52960	996 aa		5.76	□□□□□ -1.49
SCM3	YDL139C	YGL039W	P53183	348 aa	Known RBP	5.76	□□□□□ -1.49
SCM3	YDL139C	SQS1	P53866	767 aa	Known RBP	5.76	□□□□□ -1.49
SCM3	YDL139C	SPO20	Q04359	397 aa		5.76	□□□□□ -1.49
SCM3	YDL139C	AVO1	Q08236	1176 aa		5.76	□□□□□ -1.49
SCM3	YDL139C	TMA16	Q08687	178 aa		5.76	□□□□□ -1.49
SCM3	YDL139C	YPL260W	Q08977	551 aa		5.76	□□□□□ -1.49

Retrieved 100 of 5,963 RNA–protein pairs in 113.1 ms