RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	HRB1	P38922	454 aa	Known RBP RIP-Chip data	5.35	□□□□□ -1.55	not detected
VAR1	Q0140	GUS1	P46655	708 aa	Known RBP RIP-Chip data	5.35	□□□□□ -1.55	not detected
VAR1	Q0140	BCD1	P38772	366 aa		5.34	□□□□□ -1.55
VAR1	Q0140	HSV2	P50079	448 aa	Predicted RBP	5.34	□□□□□ -1.55
VAR1	Q0140	FAL1	Q12099	399 aa	Known RBP	5.34	□□□□□ -1.55
VAR1	Q0140	NPP1	P25353	742 aa		5.33	□□□□□ -1.56
VAR1	Q0140	YHR078W	P38799	552 aa		5.33	□□□□□ -1.56
VAR1	Q0140	NDC80	P40460	691 aa		5.32	□□□□□ -1.56
VAR1	Q0140	YDR306C	Q06640	478 aa		5.32	□□□□□ -1.56
VAR1	Q0140	PGK1	P00560	416 aa	Known RBP	5.31	□□□□□ -1.56
VAR1	Q0140	PPH3	P32345	308 aa		5.31	□□□□□ -1.56
VAR1	Q0140	VBA5	P36172	582 aa		5.31	□□□□□ -1.56
VAR1	Q0140	ASI2	P53895	289 aa		5.31	□□□□□ -1.56
VAR1	Q0140	MPH2	P0CD99	609 aa		5.3	□□□□□ -1.56
VAR1	Q0140	CLN2	P20438	545 aa		5.3	□□□□□ -1.56
VAR1	Q0140	YPL068C	Q02749	293 aa		5.3	□□□□□ -1.56
VAR1	Q0140	SHE9	Q04172	456 aa		5.3	□□□□□ -1.56
VAR1	Q0140	ADE8	P04161	214 aa		5.29	□□□□□ -1.56
VAR1	Q0140	LAT1	P12695	482 aa	Known RBP	5.29	□□□□□ -1.56
VAR1	Q0140	TYE7	P33122	291 aa	Predicted RBP	5.29	□□□□□ -1.56
VAR1	Q0140	UBS1	P38290	277 aa		5.29	□□□□□ -1.56
VAR1	Q0140	VPS16	Q03308	798 aa		5.29	□□□□□ -1.56
VAR1	Q0140	PKH1	Q03407	766 aa		5.29	□□□□□ -1.56
VAR1	Q0140	NUP1	P20676	1076 aa		5.28	□□□□□ -1.56
VAR1	Q0140	AFR1	P33304	620 aa		5.28	□□□□□ -1.56
VAR1	Q0140	HOS4	P40480	1083 aa		5.28	□□□□□ -1.56
VAR1	Q0140	CWC24	P53769	259 aa		5.28	□□□□□ -1.56
VAR1	Q0140	AAR2	P32357	355 aa	Predicted RBP	5.27	□□□□□ -1.57
VAR1	Q0140	UBC11	P52492	156 aa		5.27	□□□□□ -1.57
VAR1	Q0140	YKR011C	Q02209	353 aa		5.27	□□□□□ -1.57
VAR1	Q0140	HIR1	P32479	840 aa		5.26	□□□□□ -1.57
VAR1	Q0140	BDH2	P39713	417 aa		5.26	□□□□□ -1.57
VAR1	Q0140	HDA1	P53973	706 aa		5.26	□□□□□ -1.57
VAR1	Q0140	NRG1	Q03125	231 aa		5.26	□□□□□ -1.57
VAR1	Q0140	OPI10	Q08202	246 aa		5.26	□□□□□ -1.57
VAR1	Q0140	YRO2	P38079	344 aa		5.25	□□□□□ -1.57
VAR1	Q0140	SIT1	P39980	628 aa		5.25	□□□□□ -1.57
VAR1	Q0140	MAD1	P40957	749 aa		5.25	□□□□□ -1.57
VAR1	Q0140	MRK1	P50873	501 aa		5.25	□□□□□ -1.57
VAR1	Q0140	PIN2	Q12057	282 aa		5.25	□□□□□ -1.57
VAR1	Q0140	RFA1	P22336	621 aa	Known RBP	5.24	□□□□□ -1.57
VAR1	Q0140	NAP1	P25293	417 aa	Known RBP	5.24	□□□□□ -1.57
VAR1	Q0140	YKL069W	P36088	180 aa		5.24	□□□□□ -1.57
VAR1	Q0140	GLG1	P36143	616 aa		5.24	□□□□□ -1.57
VAR1	Q0140	CEP3	P40969	608 aa		5.24	□□□□□ -1.57
VAR1	Q0140	MRP8	P35719	219 aa		5.23	□□□□□ -1.57
VAR1	Q0140	CCM1	P48237	864 aa	Predicted RBP	5.23	□□□□□ -1.57
VAR1	Q0140	UBC9	P50623	157 aa	Predicted RBP	5.23	□□□□□ -1.57
VAR1	Q0140	TPO2	P53283	614 aa		5.23	□□□□□ -1.57
VAR1	Q0140	YAP1802	P53309	568 aa		5.23	□□□□□ -1.57
VAR1	Q0140	PHR1	P05066	565 aa	Known RBP RIP-Chip data	5.22	□□□□□ -1.57	not detected
VAR1	Q0140	PRI2	P20457	528 aa		5.22	□□□□□ -1.57
VAR1	Q0140	PBY1	P38254	753 aa		5.22	□□□□□ -1.57
VAR1	Q0140	SLK19	Q08581	821 aa	Known RBP	5.21	□□□□□ -1.58
VAR1	Q0140	BUL2	Q03758	920 aa	Known RBP	5.2	□□□□□ -1.58
VAR1	Q0140	TGL5	Q12043	749 aa		5.2	□□□□□ -1.58
VAR1	Q0140	CTR1	P49573	406 aa		5.19	□□□□□ -1.58
VAR1	Q0140	LCD1	Q04377	747 aa		5.19	□□□□□ -1.58
VAR1	Q0140	URA1	P28272	314 aa	Predicted RBP	5.18	□□□□□ -1.58
VAR1	Q0140	ERT1	P38140	529 aa		5.18	□□□□□ -1.58
VAR1	Q0140	TOK1	P40310	691 aa		5.18	□□□□□ -1.58
VAR1	Q0140	ARG2	P40360	574 aa		5.18	□□□□□ -1.58
VAR1	Q0140	IRR1	P40541	1150 aa		5.18	□□□□□ -1.58
VAR1	Q0140	MUS81	Q04149	632 aa	Predicted RBP	5.18	□□□□□ -1.58
VAR1	Q0140	NGG1	P32494	702 aa		5.16	□□□□□ -1.58
VAR1	Q0140	HBS1	P32769	611 aa	Known RBP	5.16	□□□□□ -1.58
VAR1	Q0140	REC104	P33323	182 aa		5.16	□□□□□ -1.58
VAR1	Q0140	STP1	Q00947	519 aa		5.16	□□□□□ -1.58
VAR1	Q0140	SVF1	Q05515	481 aa		5.16	□□□□□ -1.58
VAR1	Q0140	RPS9A	O13516	197 aa	Known RBP	5.15	□□□□□ -1.59
VAR1	Q0140	YLR415C	O13578	112 aa		5.15	□□□□□ -1.59
VAR1	Q0140	PRP9	P19736	530 aa	Known RBP	5.15	□□□□□ -1.59
VAR1	Q0140	APN1	P22936	367 aa		5.15	□□□□□ -1.59
VAR1	Q0140	JIP5	Q06214	492 aa	Predicted RBP	5.15	□□□□□ -1.59
VAR1	Q0140	SIR3	P06701	978 aa		5.14	□□□□□ -1.59
VAR1	Q0140	SPC29	P33419	253 aa		5.14	□□□□□ -1.59
VAR1	Q0140	MUP3	P38734	546 aa		5.14	□□□□□ -1.59
VAR1	Q0140	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	5.14	□□□□□ -1.59	not detected
VAR1	Q0140	PYC1	P11154	1178 aa	Known RBP	5.13	□□□□□ -1.59
VAR1	Q0140	SCT1	P32784	759 aa		5.13	□□□□□ -1.59
VAR1	Q0140	STE5	P32917	917 aa		5.13	□□□□□ -1.59
VAR1	Q0140	PZF1	P39933	429 aa		5.13	□□□□□ -1.59
VAR1	Q0140	REV7	P38927	245 aa		5.12	□□□□□ -1.59
VAR1	Q0140	SPF1	P39986	1215 aa	Known RBP	5.12	□□□□□ -1.59
VAR1	Q0140	CDC11	P32458	415 aa		5.11	□□□□□ -1.59
VAR1	Q0140	DUS1	P53759	423 aa	Known RBP	5.11	□□□□□ -1.59
VAR1	Q0140	FMP30	Q02883	468 aa		5.11	□□□□□ -1.59
VAR1	Q0140	TAF7	Q05021	590 aa		5.11	□□□□□ -1.59
VAR1	Q0140	YPR071W	Q12346	211 aa		5.11	□□□□□ -1.59
VAR1	Q0140	YBR184W	P38299	523 aa		5.1	□□□□□ -1.59
VAR1	Q0140	SAK1	P38990	1142 aa		5.1	□□□□□ -1.59
VAR1	Q0140	BAP3	P41815	604 aa		5.1	□□□□□ -1.59
VAR1	Q0140	PFA3	P42836	336 aa		5.1	□□□□□ -1.59
VAR1	Q0140	PFD1	P46988	109 aa		5.1	□□□□□ -1.59
VAR1	Q0140	TDA5	Q06417	326 aa	Known RBP	5.1	□□□□□ -1.59
VAR1	Q0140	HAL9	Q12180	1030 aa		5.1	□□□□□ -1.59
VAR1	Q0140	ATG11	Q12527	1178 aa		5.1	□□□□□ -1.59
VAR1	Q0140	CYS3	P31373	394 aa	Known RBP	5.09	□□□□□ -1.59
VAR1	Q0140	VAC8	P39968	578 aa		5.09	□□□□□ -1.59
VAR1	Q0140	IRC8	P47046	822 aa		5.09	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 29.5 ms