RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 KSR2Q6VAB6 950 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 KIF1BPQ96EK5 621 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 ZBTB22O15209 634 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 COL18A1P39060 1754 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 SCN11AQ9UI33 1791 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 HIP1O00291 1037 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 LIG1P18858 919 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 TACO1Q9BSH4 297 aaKnown RBP7.08□□□□□ -1.28
PTPRD-214ENST00000540109 DDX21Q9NR30 783 aaKnown RBP eCLIP7.08□□□□□ -1.28
PTPRD-214ENST00000540109 GTF2E1P29083 439 aaPredicted RBP7.08□□□□□ -1.28
PTPRD-214ENST00000540109 POLA2Q14181 598 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 LRCH2Q5VUJ6 765 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 LARP1Q6PKG0 1096 aaKnown RBP7.08□□□□□ -1.28
PTPRD-214ENST00000540109 TEX2Q8IWB9 1127 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 FAM177A1Q8N128 213 aaPredicted RBP7.08□□□□□ -1.28
PTPRD-214ENST00000540109 OGFRQ9NZT2 677 aa7.08□□□□□ -1.28
PTPRD-214ENST00000540109 MX1P20591 662 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 TTC5Q8N0Z6 440 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 LINS1Q8NG48 757 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 TSC1Q92574 1164 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 MRVI1Q9Y6F6 885 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 USP42Q9H9J4 1324 aaKnown RBP7.07□□□□□ -1.28
PTPRD-214ENST00000540109 K7ELQ4 463 aaPredicted RBP7.07□□□□□ -1.28
PTPRD-214ENST00000540109 LMOD2Q6P5Q4 547 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 LUZP1Q86V48 1076 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 MICALL1Q8N3F8 863 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 SEC24BO95487 1268 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 PDE1AP54750 535 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 UBXN4Q92575 508 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 IL17RAQ96F46 866 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 PCDH11XQ9BZA7 1347 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 PCDH11YQ9BZA8 1340 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 LAMB4A4D0S4 1761 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 RUFY2Q8WXA3 655 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 SLC52A2Q9HAB3 445 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 UTYO14607 1347 aa7.07□□□□□ -1.28
PTPRD-214ENST00000540109 CSB-PGBD3P0DP91 1061 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 MAP9Q49MG5 647 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 GIGYF1O75420 1035 aaPredicted RBP7.06□□□□□ -1.28
PTPRD-214ENST00000540109 KRT24Q2M2I5 525 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 KRBA2Q6ZNG9 492 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 G2E3Q7L622 706 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 BICD2Q8TD16 824 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 A0A1B0GUL7 405 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 BEND3Q5T5X7 828 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 ANTXR1Q9H6X2 564 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 NLRP2Q9NX02 1062 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 FMNL2Q96PY5 1086 aa7.06□□□□□ -1.28
PTPRD-214ENST00000540109 NOLC1Q14978 699 aaKnown RBP eCLIP7.06□□□□□ -1.28
PTPRD-214ENST00000540109 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.06□□□□□ -1.28
PTPRD-214ENST00000540109 SNRPA1P09661 255 aaKnown RBP7.05□□□□□ -1.28
PTPRD-214ENST00000540109 PHKG2P15735 406 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 MIS18AQ9NYP9 233 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 ERVV-2B6SEH9 535 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 TNPO1Q92973 898 aaKnown RBP7.05□□□□□ -1.28
PTPRD-214ENST00000540109 USP44Q9H0E7 712 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 EFCC1Q9HA90 598 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 USP25Q9UHP3 1055 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 FBXO3Q9UK99 471 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 ZKSCAN5Q9Y2L8 839 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 LRRFIP2Q9Y608 721 aaKnown RBP7.05□□□□□ -1.28
PTPRD-214ENST00000540109 RFX7Q2KHR2 1363 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 SALL3Q9BXA9 1300 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 NEBLO76041 1014 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 CLSTN1O94985 981 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 CNTROBQ8N137 903 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 USHBP1Q8N6Y0 703 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 C9orf78Q9NZ63 289 aaPredicted RBP7.05□□□□□ -1.28
PTPRD-214ENST00000540109 SOS2Q07890 1332 aaPredicted RBP7.05□□□□□ -1.28
PTPRD-214ENST00000540109 RAD50Q92878 1312 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 GLRX3O76003 335 aaKnown RBP7.05□□□□□ -1.28
PTPRD-214ENST00000540109 LRRFIP1Q32MZ4 808 aaKnown RBP7.05□□□□□ -1.28
PTPRD-214ENST00000540109 TEX13AQ9BXU3 409 aaPredicted RBP7.05□□□□□ -1.28
PTPRD-214ENST00000540109 BRMS1Q9HCU9 246 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 WDR17Q8IZU2 1322 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 SDSP20132 328 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 CHPF2Q9P2E5 772 aa7.05□□□□□ -1.28
PTPRD-214ENST00000540109 CBFA2T2O43439 604 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 CCDC192P0DO97 292 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 GSPT1P15170 499 aaKnown RBP7.04□□□□□ -1.28
PTPRD-214ENST00000540109 RPAINQ86UA6 219 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 PDILTQ8N807 584 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.04□□□□□ -1.28
PTPRD-214ENST00000540109 RGPD2P0DJD1 1756 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 F6X3S4 739 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 ZNF790Q6PG37 636 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 CLASRPQ8N2M8 674 aaKnown RBP7.04□□□□□ -1.28
PTPRD-214ENST00000540109 USP26Q9BXU7 913 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 STRCP1A6NGW2 1772 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 LOC102724159A0A0B4J2E5 919 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 SHTN1A0MZ66 631 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 VPS37CA5D8V6 355 aaPredicted RBP7.04□□□□□ -1.28
PTPRD-214ENST00000540109 PWP2Q15269 919 aaKnown RBP7.04□□□□□ -1.28
PTPRD-214ENST00000540109 NHSL1Q5SYE7 1610 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 TMCO5BA8MYB1 307 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 SF3A1Q15459 793 aaKnown RBP7.04□□□□□ -1.28
PTPRD-214ENST00000540109 PTPN14Q15678 1187 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 RNF187Q5TA31 235 aaPredicted RBP7.04□□□□□ -1.28
PTPRD-214ENST00000540109 MPRIPQ6WCQ1 1025 aa7.04□□□□□ -1.28
PTPRD-214ENST00000540109 GBP6Q6ZN66 633 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms