RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ATP6V0A2Q9Y487 856 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 CDHR2Q9BYE9 1310 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 CASP8AP2Q9UKL3 1982 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 RRP1P56182 461 aaKnown RBP10.63□□□□□ -0.71
NEDD8-207ENST00000533242 EIF4A1P60842 406 aaKnown RBP10.63□□□□□ -0.71
NEDD8-207ENST00000533242 AOC3Q16853 763 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 PARP10Q53GL7 1025 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 SLC10A5Q5PT55 438 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 GIGYF2Q6Y7W6 1299 aaKnown RBP10.63□□□□□ -0.71
NEDD8-207ENST00000533242 RTFDC1Q9BY42 306 aaPredicted RBP10.63□□□□□ -0.71
NEDD8-207ENST00000533242 ZBTB3Q9H5J0 574 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 CELF2O95319 508 aaKnown RBP10.63□□□□□ -0.71
NEDD8-207ENST00000533242 BRPF1P55201 1214 aaPredicted RBP10.63□□□□□ -0.71
NEDD8-207ENST00000533242 CXCL9Q07325 125 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 C3orf67Q6ZVT6 689 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 SAPCD2Q86UD0 394 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 SLC51AQ86UW1 340 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 NLRP3Q96P20 1036 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 RCAN3Q9UKA8 241 aa10.63□□□□□ -0.71
NEDD8-207ENST00000533242 TCERG1O14776 1098 aaKnown RBP10.62□□□□□ -0.71
NEDD8-207ENST00000533242 MYL6BP14649 208 aa10.62□□□□□ -0.71
NEDD8-207ENST00000533242 GMPSP49915 693 aaPredicted RBP10.62□□□□□ -0.71
NEDD8-207ENST00000533242 EXOC6Q8TAG9 804 aa10.62□□□□□ -0.71
NEDD8-207ENST00000533242 ZC3H15Q8WU90 426 aaKnown RBP10.62□□□□□ -0.71
NEDD8-207ENST00000533242 CCDC136Q96JN2 1154 aa10.62□□□□□ -0.71
NEDD8-207ENST00000533242 TSKSQ9UJT2 592 aa10.62□□□□□ -0.71
NEDD8-207ENST00000533242 PCNTO95613 3336 aa10.62□□□□□ -0.71
NEDD8-207ENST00000533242 NEFMP07197 916 aa10.62□□□□□ -0.71
NEDD8-207ENST00000533242 MCOLN1Q9GZU1 580 aa10.62□□□□□ -0.71
NEDD8-207ENST00000533242 LRRC37AA6NMS7 1700 aa10.62□□□□□ -0.71
NEDD8-207ENST00000533242 ABCC4O15439 1325 aa10.61□□□□□ -0.71
NEDD8-207ENST00000533242 FANCIQ9NVI1 1328 aa10.61□□□□□ -0.71
NEDD8-207ENST00000533242 TNIP1Q15025 636 aa10.61□□□□□ -0.71
NEDD8-207ENST00000533242 CIAPIN1Q6FI81 312 aa10.61□□□□□ -0.71
NEDD8-207ENST00000533242 SP8Q8IXZ3 490 aa10.61□□□□□ -0.71
NEDD8-207ENST00000533242 UTP14AQ9BVJ6 771 aaKnown RBP10.61□□□□□ -0.71
NEDD8-207ENST00000533242 GLIS2Q9BZE0 524 aaPredicted RBP10.61□□□□□ -0.71
NEDD8-207ENST00000533242 DDX60Q8IY21 1712 aaKnown RBP10.61□□□□□ -0.71
NEDD8-207ENST00000533242 PLIN1O60240 522 aa10.61□□□□□ -0.71
NEDD8-207ENST00000533242 BBOX1O75936 387 aa10.61□□□□□ -0.71
NEDD8-207ENST00000533242 KIAA2012Q0VF49 1180 aa10.6□□□□□ -0.71
NEDD8-207ENST00000533242 DPP8Q6V1X1 898 aaPredicted RBP10.6□□□□□ -0.71
NEDD8-207ENST00000533242 BCL2L13Q9BXK5 485 aa10.6□□□□□ -0.71
NEDD8-207ENST00000533242 PCDH10Q9P2E7 1040 aa10.6□□□□□ -0.71
NEDD8-207ENST00000533242 TAF1P21675 1872 aa10.6□□□□□ -0.71
NEDD8-207ENST00000533242 CDC37L1Q7L3B6 337 aa10.59□□□□□ -0.71
NEDD8-207ENST00000533242 MPNDQ8N594 471 aa10.59□□□□□ -0.71
NEDD8-207ENST00000533242 HIRAP54198 1017 aaPredicted RBP10.59□□□□□ -0.71
NEDD8-207ENST00000533242 DGKZQ13574 1117 aa10.59□□□□□ -0.71
NEDD8-207ENST00000533242 NFE2L2Q16236 605 aa10.59□□□□□ -0.71
NEDD8-207ENST00000533242 DUOX1Q9NRD9 1551 aa10.59□□□□□ -0.71
NEDD8-207ENST00000533242 AKAP11Q9UKA4 1901 aa10.59□□□□□ -0.71
NEDD8-207ENST00000533242 POLR2AP24928 1970 aaKnown RBP10.59□□□□□ -0.71
NEDD8-207ENST00000533242 NOGQ13253 232 aa10.58□□□□□ -0.72
NEDD8-207ENST00000533242 LRP10Q7Z4F1 713 aa10.58□□□□□ -0.72
NEDD8-207ENST00000533242 PLEKHF1Q96S99 279 aa10.58□□□□□ -0.72
NEDD8-207ENST00000533242 ZNF408Q9H9D4 720 aa10.58□□□□□ -0.72
NEDD8-207ENST00000533242 HSP90AB3PQ58FF7 597 aa10.58□□□□□ -0.72
NEDD8-207ENST00000533242 TMC4Q7Z404 712 aa10.58□□□□□ -0.72
NEDD8-207ENST00000533242 TRPM4Q8TD43 1214 aa10.58□□□□□ -0.72
NEDD8-207ENST00000533242 CNOT7Q9UIV1 285 aaKnown RBP10.58□□□□□ -0.72
NEDD8-207ENST00000533242 H7C1D1 291 aa10.57□□□□□ -0.72
NEDD8-207ENST00000533242 RAD17O75943 681 aa10.57□□□□□ -0.72
NEDD8-207ENST00000533242 GRAPQ13588 217 aa10.57□□□□□ -0.72
NEDD8-207ENST00000533242 PDIA6Q15084 440 aa10.57□□□□□ -0.72
NEDD8-207ENST00000533242 DDX46Q7L014 1031 aaKnown RBP10.57□□□□□ -0.72
NEDD8-207ENST00000533242 GRAPLQ8TC17 118 aaPredicted RBP10.57□□□□□ -0.72
NEDD8-207ENST00000533242 CFAP44Q96MT7 982 aa10.57□□□□□ -0.72
NEDD8-207ENST00000533242 THUMPD2Q9BTF0 503 aaKnown RBP10.57□□□□□ -0.72
NEDD8-207ENST00000533242 PNNQ9H307 717 aaKnown RBP10.57□□□□□ -0.72
NEDD8-207ENST00000533242 YDJCA8MPS7 323 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 USP48Q86UV5 1035 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 DPF2Q92785 391 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 SAGE1Q9NXZ1 904 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 HUNKP57058 714 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 C20orf194Q5TEA3 1177 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 NLRP10Q86W26 655 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 MICALL2Q8IY33 904 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 CCDC146Q8IYE0 955 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 BABAM1Q9NWV8 329 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 TSPYL4Q9UJ04 414 aa10.56□□□□□ -0.72
NEDD8-207ENST00000533242 ZNF521Q96K83 1311 aa10.55□□□□□ -0.72
NEDD8-207ENST00000533242 SHTN1A0MZ66 631 aa10.55□□□□□ -0.72
NEDD8-207ENST00000533242 HCLS1P14317 486 aaPredicted RBP10.55□□□□□ -0.72
NEDD8-207ENST00000533242 RGMBQ6NW40 437 aa10.55□□□□□ -0.72
NEDD8-207ENST00000533242 SKAP1Q86WV1 359 aa10.55□□□□□ -0.72
NEDD8-207ENST00000533242 ZIC5Q96T25 663 aa10.55□□□□□ -0.72
NEDD8-207ENST00000533242 SH3TC1Q8TE82 1336 aa10.55□□□□□ -0.72
NEDD8-207ENST00000533242 MAPK8IP3Q9UPT6 1336 aa10.55□□□□□ -0.72
NEDD8-207ENST00000533242 FAM155AB1AL88 458 aaPredicted RBP10.55□□□□□ -0.72
NEDD8-207ENST00000533242 EIF2S2P20042 333 aaKnown RBP10.55□□□□□ -0.72
NEDD8-207ENST00000533242 PROSER3Q2NL68 480 aa10.55□□□□□ -0.72
NEDD8-207ENST00000533242 CCDC102AQ96A19 550 aa10.55□□□□□ -0.72
NEDD8-207ENST00000533242 TCIRG1Q13488 830 aa10.54□□□□□ -0.72
NEDD8-207ENST00000533242 DUSP27Q5VZP5 1158 aa10.54□□□□□ -0.72
NEDD8-207ENST00000533242 GBA2Q9HCG7 927 aaPredicted RBP10.54□□□□□ -0.72
NEDD8-207ENST00000533242 SPINK5Q9NQ38 1064 aaPredicted RBP10.54□□□□□ -0.72
NEDD8-207ENST00000533242 TRMT112Q9UI30 125 aaKnown RBP10.54□□□□□ -0.72
NEDD8-207ENST00000533242 PSME4Q14997 1843 aa10.54□□□□□ -0.72
NEDD8-207ENST00000533242 RPS12P25398 132 aaKnown RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms