RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 COPRSQ9NQ92 184 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 USP25Q9UHP3 1055 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 HCLS1P14317 486 aaPredicted RBP12.92□□□□□ -0.34
VPS52-217ENST00000478934 GIMAP6Q6P9H5 292 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 ARID3AQ99856 593 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 TM6SF1Q9BZW5 370 aa12.92□□□□□ -0.34
VPS52-217ENST00000478934 OFD1O75665 1012 aa12.91□□□□□ -0.34
VPS52-217ENST00000478934 CASP7P55210 303 aa12.91□□□□□ -0.34
VPS52-217ENST00000478934 NEUROD6Q96NK8 337 aa12.91□□□□□ -0.34
VPS52-217ENST00000478934 CCDC85AQ96PX6 553 aaPredicted RBP12.91□□□□□ -0.34
VPS52-217ENST00000478934 ZNF330Q9Y3S2 320 aaPredicted RBP12.91□□□□□ -0.34
VPS52-217ENST00000478934 LARP1BQ659C4 914 aaKnown RBP12.91□□□□□ -0.34
VPS52-217ENST00000478934 BLOC1S2Q6QNY1 142 aa12.91□□□□□ -0.34
VPS52-217ENST00000478934 C17orf53Q8N3J3 647 aaPredicted RBP12.91□□□□□ -0.34
VPS52-217ENST00000478934 MED23Q9ULK4 1368 aa12.9□□□□□ -0.34
VPS52-217ENST00000478934 ALS2Q96Q42 1657 aa12.9□□□□□ -0.34
VPS52-217ENST00000478934 FOXO4P98177 505 aa12.9□□□□□ -0.34
VPS52-217ENST00000478934 ZKSCAN5Q9Y2L8 839 aa12.9□□□□□ -0.34
VPS52-217ENST00000478934 ADAMTS7Q9UKP4 1686 aa12.9□□□□□ -0.34
VPS52-217ENST00000478934 JAK2O60674 1132 aa12.9□□□□□ -0.35
VPS52-217ENST00000478934 ATP5JP18859 108 aa12.9□□□□□ -0.35
VPS52-217ENST00000478934 RPS6KB1P23443 525 aa12.9□□□□□ -0.35
VPS52-217ENST00000478934 LRRC24Q50LG9 513 aa12.9□□□□□ -0.35
VPS52-217ENST00000478934 TMEM87AQ8NBN3 555 aa12.9□□□□□ -0.35
VPS52-217ENST00000478934 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.9□□□□□ -0.352e-8■■■■□ 19.8
VPS52-217ENST00000478934 TFIP11Q9UBB9 837 aaKnown RBP12.9□□□□□ -0.35
VPS52-217ENST00000478934 SCN11AQ9UI33 1791 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 RABL6Q3YEC7 729 aaPredicted RBP12.89□□□□□ -0.35
VPS52-217ENST00000478934 TOM1L2Q6ZVM7 507 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 PUS3Q9BZE2 481 aaKnown RBP12.89□□□□□ -0.35
VPS52-217ENST00000478934 SPATA31A3Q5VYP0 1347 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 ZNF609O15014 1411 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 HIP1O00291 1037 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 FOSBP53539 338 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 UBE2HP62256 183 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 PLBD2Q8NHP8 589 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 UBE2Q2Q8WVN8 375 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 SYAP1Q96A49 352 aaPredicted RBP12.89□□□□□ -0.35
VPS52-217ENST00000478934 DDX11Q96FC9 970 aa12.89□□□□□ -0.35
VPS52-217ENST00000478934 ZSCAN31Q96LW9 406 aaPredicted RBP12.89□□□□□ -0.35
VPS52-217ENST00000478934 SH2B1Q9NRF2 756 aaPredicted RBP12.89□□□□□ -0.35
VPS52-217ENST00000478934 GOLIM4O00461 696 aa12.88□□□□□ -0.35
VPS52-217ENST00000478934 CCDC183Q5T5S1 534 aa12.88□□□□□ -0.35
VPS52-217ENST00000478934 ATG9AQ7Z3C6 839 aa12.88□□□□□ -0.35
VPS52-217ENST00000478934 SNRKQ9NRH2 765 aa12.88□□□□□ -0.35
VPS52-217ENST00000478934 STRN4Q9NRL3 753 aa12.88□□□□□ -0.35
VPS52-217ENST00000478934 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.88□□□□□ -0.354e-11■■□□□ 12.7
VPS52-217ENST00000478934 CYP21A2P08686 494 aa12.88□□□□□ -0.35
VPS52-217ENST00000478934 CAMK4Q16566 473 aa12.88□□□□□ -0.35
VPS52-217ENST00000478934 TTC6Q86TZ1 520 aa12.88□□□□□ -0.35
VPS52-217ENST00000478934 PRDM11Q9NQV5 511 aa12.88□□□□□ -0.35
VPS52-217ENST00000478934 COL18A1P39060 1754 aa12.87□□□□□ -0.35
VPS52-217ENST00000478934 PSMA5P28066 241 aa12.87□□□□□ -0.35
VPS52-217ENST00000478934 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.87□□□□□ -0.35
VPS52-217ENST00000478934 STOX1Q6ZVD7 989 aa12.87□□□□□ -0.35
VPS52-217ENST00000478934 TTC12Q9H892 705 aaPredicted RBP12.87□□□□□ -0.35
VPS52-217ENST00000478934 STRCP1A6NGW2 1772 aa12.87□□□□□ -0.35
VPS52-217ENST00000478934 TNS3Q68CZ2 1445 aa12.87□□□□□ -0.35
VPS52-217ENST00000478934 ZCRB1Q8TBF4 217 aaKnown RBP12.87□□□□□ -0.35
VPS52-217ENST00000478934 CCDC39Q9UFE4 941 aa12.87□□□□□ -0.35
VPS52-217ENST00000478934 H7C1W4 665 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 RNF20Q5VTR2 975 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 Q6ZUG5 572 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 BRINP3Q76B58 766 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 CADPS2Q86UW7 1296 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 FAM13BQ9NYF5 915 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.86□□□□□ -0.35
VPS52-217ENST00000478934 AP5Z1O43299 807 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 ZNF500O60304 480 aaPredicted RBP12.86□□□□□ -0.35
VPS52-217ENST00000478934 LIG1P18858 919 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 CHST3Q7LGC8 479 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 SYNE4Q8N205 404 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 HAUS7Q99871 368 aa12.86□□□□□ -0.35
VPS52-217ENST00000478934 ADCY5O95622 1261 aa12.85□□□□□ -0.35
VPS52-217ENST00000478934 HS1BP3Q53T59 392 aa12.85□□□□□ -0.35
VPS52-217ENST00000478934 NEK1Q96PY6 1258 aa12.85□□□□□ -0.35
VPS52-217ENST00000478934 KIF1AQ12756 1690 aa12.85□□□□□ -0.35
VPS52-217ENST00000478934 BRF1Q92994 677 aa12.85□□□□□ -0.35
VPS52-217ENST00000478934 MRC1P22897 1456 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 UQCRHLA0A096LP55 91 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 PHF14O94880 888 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 UQCRHP07919 91 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 TPM2P07951 284 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 HSP90B1P14625 803 aaKnown RBP12.84□□□□□ -0.35
VPS52-217ENST00000478934 MCMDC2Q4G0Z9 681 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 HSP90AB3PQ58FF7 597 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 USPL1Q5W0Q7 1092 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 CWC25Q9NXE8 425 aaPredicted RBP12.84□□□□□ -0.35
VPS52-217ENST00000478934 ATP6V1DQ9Y5K8 247 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 TTLL5Q6EMB2 1281 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 TSC1Q92574 1164 aa12.84□□□□□ -0.35
VPS52-217ENST00000478934 RRP9O43818 475 aaKnown RBP12.83□□□□□ -0.36
VPS52-217ENST00000478934 ADORA1P30542 326 aa12.83□□□□□ -0.36
VPS52-217ENST00000478934 CEBPZQ03701 1054 aaKnown RBP12.83□□□□□ -0.36
VPS52-217ENST00000478934 DNTTIP2Q5QJE6 756 aaKnown RBP12.83□□□□□ -0.36
VPS52-217ENST00000478934 FUCA2Q9BTY2 467 aa12.83□□□□□ -0.36
VPS52-217ENST00000478934 CKAP2LQ8IYA6 745 aa12.83□□□□□ -0.36
VPS52-217ENST00000478934 KBTBD3Q8NAB2 608 aa12.83□□□□□ -0.36
VPS52-217ENST00000478934 SPC24Q8NBT2 197 aa12.83□□□□□ -0.36
VPS52-217ENST00000478934 PAG1Q9NWQ8 432 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms