RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Myh1Q5SX40 1942 aa10.57□□□□□ -0.72
Trim39-201ENSMUST00000042717 Arid3aQ62431 601 aa10.57□□□□□ -0.72
Trim39-201ENSMUST00000042717 Rbm27Q5SFM8 1060 aaKnown RBP10.57□□□□□ -0.72
Trim39-201ENSMUST00000042717 NfkbibQ60778 359 aa10.57□□□□□ -0.72
Trim39-201ENSMUST00000042717 CpzQ8R4V4 654 aa10.57□□□□□ -0.72
Trim39-201ENSMUST00000042717 Ric1Q69ZJ7 1422 aa10.57□□□□□ -0.72
Trim39-201ENSMUST00000042717 Rbbp8nlA2ABX0 614 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 MeiocA2AG06 965 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Jdp2P97875 163 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Fam198bQ3UPI1 517 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Pknox2Q8BG99 474 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Golim4Q8BXA1 655 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Rbm33Q9CXK9 1231 aaKnown RBP10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Gja10Q9WUS4 505 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Atp2b3Q0VF55 1220 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Chmp4cQ9D7F7 232 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Snrpa1P57784 255 aaKnown RBP10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Sytl4Q9R0Q1 673 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Ccne2Q9Z238 404 aa10.56□□□□□ -0.72
Trim39-201ENSMUST00000042717 Tmem143Q8VD26 458 aa10.55□□□□□ -0.72
Trim39-201ENSMUST00000042717 Plekho1Q9JIY0 408 aa10.55□□□□□ -0.72
Trim39-201ENSMUST00000042717 Dpf1Q9QX66 387 aa10.55□□□□□ -0.72
Trim39-201ENSMUST00000042717 Ankrd31A0A140LI88 1765 aa10.55□□□□□ -0.72
Trim39-201ENSMUST00000042717 Npy5rO70342 466 aa10.55□□□□□ -0.72
Trim39-201ENSMUST00000042717 Jakmip1Q8BVL9 626 aa10.55□□□□□ -0.72
Trim39-201ENSMUST00000042717 MecomP14404 1042 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Ciao1Q99KN2 339 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 AtrnQ9WU60 1428 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Gm7347D3YYI9 267 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Speer4aF8VPX6 267 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 IntuQ059U7 942 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Rtkn2Q14B46 604 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Slc38a10Q5I012 1090 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Rbm26Q6NZN0 1012 aaKnown RBP10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Arap2Q8BZ05 1703 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 1700029H14RikE9PY36 240 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Sptbn5F6UCX4 1208 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Slc4a1P04919 929 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Mdm2P23804 489 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Casp1P29452 402 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Slc39a11Q8BWY7 342 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Mlh1Q9JK91 760 aa10.54□□□□□ -0.72
Trim39-201ENSMUST00000042717 Mybbp1aQ7TPV4 1344 aaKnown RBP10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Atp8a2P98200 1148 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Krt25Q8VCW2 446 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Zfyve9A2A8R0 1397 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 4931408C20RikE9PWP9 1381 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 PnnO35691 725 aaKnown RBP10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 NpeppsQ11011 920 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 1810065E05RikQ5NC41 235 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Asap2Q7SIG6 958 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Tmc1Q8R4P5 757 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Ttc14Q9CSP9 761 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Pus3Q9JI38 481 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 IncenpQ9WU62 880 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Lama4P97927 1816 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Ubn2Q80WC1 1314 aa10.53□□□□□ -0.72
Trim39-201ENSMUST00000042717 Ly75Q60767 1723 aa10.52□□□□□ -0.72
Trim39-201ENSMUST00000042717 Pde8bE9Q4S1 865 aa10.52□□□□□ -0.72
Trim39-201ENSMUST00000042717 TsksO54887 585 aa10.52□□□□□ -0.72
Trim39-201ENSMUST00000042717 Rfx1P48377 963 aa10.52□□□□□ -0.72
Trim39-201ENSMUST00000042717 Ppp1r9bQ6R891 817 aaKnown RBP10.52□□□□□ -0.72
Trim39-201ENSMUST00000042717 Noc3lQ8VI84 807 aaKnown RBP10.52□□□□□ -0.72
Trim39-201ENSMUST00000042717 TnksQ6PFX9 1320 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Ccdc85cE9Q6B2 420 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Znf496Q5SXI5 585 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Pde3bQ61409 1100 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Ddx11Q6AXC6 880 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Fam102bQ8BQS4 339 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Rhot2Q8JZN7 620 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Sde2Q8K1J5 448 aaKnown RBP10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Top1mtQ8R4U6 593 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Pmfbp1Q9WVQ0 1022 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 C4bP01029 1738 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Ppfia1B2RXQ2 1266 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Tmem266Q8BZB3 538 aa10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Ccdc9Q8VC31 543 aaKnown RBP10.52□□□□□ -0.73
Trim39-201ENSMUST00000042717 Phactr2B1AVP0 632 aa10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 MccE9PWI3 1003 aa10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 Pram1Q6BCL1 675 aa10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 Sptlc3Q8BG54 563 aa10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 Ufl1Q8CCJ3 793 aaKnown RBP10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 Lgr5Q9Z1P4 907 aa10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 Kdm3aQ6PCM1 1323 aa10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 Hoxa7P02830 229 aa10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 Celf1P28659 486 aaKnown RBP10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 NppbP40753 121 aa10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 Plbd2Q3TCN2 594 aa10.51□□□□□ -0.73
Trim39-201ENSMUST00000042717 Ell2Q3UKU1 639 aa10.5□□□□□ -0.73
Trim39-201ENSMUST00000042717 Ptcd1Q8C2E4 695 aaKnown RBP10.5□□□□□ -0.73
Trim39-201ENSMUST00000042717 Lmbrd2Q8C561 694 aa10.5□□□□□ -0.73
Trim39-201ENSMUST00000042717 Naa16Q9DBB4 864 aa10.5□□□□□ -0.73
Trim39-201ENSMUST00000042717 Speer4dL7N216 212 aa10.5□□□□□ -0.73
Trim39-201ENSMUST00000042717 Nlrp9aQ66X03 949 aa10.5□□□□□ -0.73
Trim39-201ENSMUST00000042717 Golgb1E9PVZ8 3238 aa10.5□□□□□ -0.73
Trim39-201ENSMUST00000042717 Gm10093D3YYI8 482 aa10.49□□□□□ -0.73
Trim39-201ENSMUST00000042717 Hdac1O09106 482 aaKnown RBP10.49□□□□□ -0.73
Trim39-201ENSMUST00000042717 Rbm17Q8JZX4 405 aaKnown RBP10.49□□□□□ -0.73
Trim39-201ENSMUST00000042717 Rps8P62242 208 aaKnown RBP10.49□□□□□ -0.73
Trim39-201ENSMUST00000042717 Kiaa0753Q6A000 959 aa10.49□□□□□ -0.73
Retrieved 100 of 22,080 RNA–protein pairs in 118.7 ms