Protein–RNA interactions for Protein: Q8C2E4

Ptcd1, Pentatricopeptide repeat-containing protein 1, mitochondrial, mousemouse

Known RBP Predictions only

Length 695 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptcd1Q8C2E4 Gm25239-201ENSMUST00000174915 86 ntBASIC48.79■■■■■ 5.4
Ptcd1Q8C2E4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC45.39■■■■■ 4.86
Ptcd1Q8C2E4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC44.72■■■■■ 4.75
Ptcd1Q8C2E4 Gm24109-201ENSMUST00000175489 103 ntBASIC42.57■■■■■ 4.41
Ptcd1Q8C2E4 Gm15042-201ENSMUST00000120212 883 ntBASIC42.06■■■■■ 4.32
Ptcd1Q8C2E4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC41.24■■■■■ 4.19
Ptcd1Q8C2E4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC41.21■■■■■ 4.19
Ptcd1Q8C2E4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC41.08■■■■■ 4.17
Ptcd1Q8C2E4 Gm15045-201ENSMUST00000117359 883 ntBASIC40.99■■■■■ 4.15
Ptcd1Q8C2E4 Gm23366-201ENSMUST00000175022 89 ntBASIC40.68■■■■■ 4.1
Ptcd1Q8C2E4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC40.58■■■■■ 4.09
Ptcd1Q8C2E4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC40.58■■■■■ 4.09
Ptcd1Q8C2E4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC39.93■■■■□ 3.98
Ptcd1Q8C2E4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC39.57■■■■□ 3.93
Ptcd1Q8C2E4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
Ptcd1Q8C2E4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC39.49■■■■□ 3.91
Ptcd1Q8C2E4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
Ptcd1Q8C2E4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
Ptcd1Q8C2E4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
Ptcd1Q8C2E4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC39.2■■■■□ 3.87
Ptcd1Q8C2E4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC38.98■■■■□ 3.83
Ptcd1Q8C2E4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
Ptcd1Q8C2E4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC38.77■■■■□ 3.8
Ptcd1Q8C2E4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC38.72■■■■□ 3.79
Ptcd1Q8C2E4 Gm25238-201ENSMUST00000174914 89 ntBASIC38.69■■■■□ 3.78
Ptcd1Q8C2E4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC38.06■■■■□ 3.68
Ptcd1Q8C2E4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
Ptcd1Q8C2E4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC37.89■■■■□ 3.66
Ptcd1Q8C2E4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC37.79■■■■□ 3.64
Ptcd1Q8C2E4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
Ptcd1Q8C2E4 Psd-208ENSMUST00000224556 2034 ntBASIC37.67■■■■□ 3.62
Ptcd1Q8C2E4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
Ptcd1Q8C2E4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC37.6■■■■□ 3.61
Ptcd1Q8C2E4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC37.52■■■■□ 3.6
Ptcd1Q8C2E4 Gm25262-201ENSMUST00000174934 133 ntBASIC37.4■■■■□ 3.58
Ptcd1Q8C2E4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC37.38■■■■□ 3.57
Ptcd1Q8C2E4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC37.36■■■■□ 3.57
Ptcd1Q8C2E4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC37.31■■■■□ 3.56
Ptcd1Q8C2E4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC37.21■■■■□ 3.55
Ptcd1Q8C2E4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC37.14■■■■□ 3.54
Ptcd1Q8C2E4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.53
Ptcd1Q8C2E4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC37.12■■■■□ 3.53
Ptcd1Q8C2E4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC37.01■■■■□ 3.52
Ptcd1Q8C2E4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC36.92■■■■□ 3.5
Ptcd1Q8C2E4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC36.83■■■■□ 3.49
Ptcd1Q8C2E4 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC36.77■■■■□ 3.48
Ptcd1Q8C2E4 Gm27325-201ENSMUST00000175467 74 ntBASIC36.74■■■■□ 3.47
Ptcd1Q8C2E4 Gm26115-201ENSMUST00000175605 87 ntBASIC36.71■■■■□ 3.47
Ptcd1Q8C2E4 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC36.68■■■■□ 3.46
Ptcd1Q8C2E4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC36.67■■■■□ 3.46
Ptcd1Q8C2E4 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC36.61■■■■□ 3.45
Ptcd1Q8C2E4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC36.51■■■■□ 3.44
Ptcd1Q8C2E4 Rab21-202ENSMUST00000218831 843 ntBASIC36.47■■■■□ 3.43
Ptcd1Q8C2E4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC36.46■■■■□ 3.43
Ptcd1Q8C2E4 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC36.43■■■■□ 3.42
Ptcd1Q8C2E4 Gm8109-201ENSMUST00000194076 746 ntBASIC36.42■■■■□ 3.42
Ptcd1Q8C2E4 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
Ptcd1Q8C2E4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC36.3■■■■□ 3.4
Ptcd1Q8C2E4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC36.29■■■■□ 3.4
Ptcd1Q8C2E4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
Ptcd1Q8C2E4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
Ptcd1Q8C2E4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC36.16■■■■□ 3.38
Ptcd1Q8C2E4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC36.14■■■■□ 3.38
Ptcd1Q8C2E4 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC36.12■■■■□ 3.37
Ptcd1Q8C2E4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC36■■■■□ 3.35
Ptcd1Q8C2E4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC35.97■■■■□ 3.35
Ptcd1Q8C2E4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC35.96■■■■□ 3.35
Ptcd1Q8C2E4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC35.83■■■■□ 3.33
Ptcd1Q8C2E4 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC35.81■■■■□ 3.32
Ptcd1Q8C2E4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC35.79■■■■□ 3.32
Ptcd1Q8C2E4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
Ptcd1Q8C2E4 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
Ptcd1Q8C2E4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC35.6■■■■□ 3.29
Ptcd1Q8C2E4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.29
Ptcd1Q8C2E4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
Ptcd1Q8C2E4 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
Ptcd1Q8C2E4 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC35.5■■■■□ 3.27
Ptcd1Q8C2E4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC35.44■■■■□ 3.26
Ptcd1Q8C2E4 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
Ptcd1Q8C2E4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
Ptcd1Q8C2E4 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC35.42■■■■□ 3.26
Ptcd1Q8C2E4 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC35.38■■■■□ 3.25
Ptcd1Q8C2E4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
Ptcd1Q8C2E4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC35.34■■■■□ 3.25
Ptcd1Q8C2E4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC35.34■■■■□ 3.25
Ptcd1Q8C2E4 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
Ptcd1Q8C2E4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
Ptcd1Q8C2E4 Gm17082-201ENSMUST00000166043 1091 ntBASIC35.29■■■■□ 3.24
Ptcd1Q8C2E4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
Ptcd1Q8C2E4 Gm24804-201ENSMUST00000174982 85 ntBASIC35.16■■■■□ 3.22
Ptcd1Q8C2E4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC35.15■■■■□ 3.22
Ptcd1Q8C2E4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC35.11■■■■□ 3.21
Ptcd1Q8C2E4 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC35.02■■■■□ 3.2
Ptcd1Q8C2E4 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC34.99■■■■□ 3.19
Ptcd1Q8C2E4 Gm27322-201ENSMUST00000184007 104 ntBASIC34.98■■■■□ 3.19
Ptcd1Q8C2E4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC34.96■■■■□ 3.19
Ptcd1Q8C2E4 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
Ptcd1Q8C2E4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34.9■■■■□ 3.18
Ptcd1Q8C2E4 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC34.89■■■■□ 3.18
Ptcd1Q8C2E4 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC34.83■■■■□ 3.17
Retrieved 100 of 76,532 protein–RNA pairs in 12.4 ms