RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	SIP5	P40210	489 aa	Known RBP	5.78	□□□□□ -1.48
ROT1	YMR200W	SIZ1	Q04195	904 aa		5.78	□□□□□ -1.48
ROT1	YMR200W	YLR225C	Q05948	407 aa	Known RBP	5.78	□□□□□ -1.48
ROT1	YMR200W	KIN2	P13186	1147 aa	Known RBP	5.77	□□□□□ -1.49
ROT1	YMR200W	MAL31	P38156	614 aa		5.77	□□□□□ -1.49
ROT1	YMR200W	YAP1801	P38856	637 aa		5.77	□□□□□ -1.49
ROT1	YMR200W	YGL176C	P46945	554 aa		5.77	□□□□□ -1.49
ROT1	YMR200W	PMT3	P47190	753 aa		5.77	□□□□□ -1.49
ROT1	YMR200W	HFM1	P51979	1187 aa		5.77	□□□□□ -1.49
ROT1	YMR200W	PGI1	P12709	554 aa	Known RBP	5.76	□□□□□ -1.49
ROT1	YMR200W	OPI1	P21957	404 aa		5.76	□□□□□ -1.49
ROT1	YMR200W	RPL8B	P29453	256 aa	Known RBP	5.76	□□□□□ -1.49
ROT1	YMR200W	STE5	P32917	917 aa		5.76	□□□□□ -1.49
ROT1	YMR200W	HOS4	P40480	1083 aa		5.76	□□□□□ -1.49
ROT1	YMR200W	XYL2	Q07993	356 aa		5.76	□□□□□ -1.49
ROT1	YMR200W	SNU66	Q12420	587 aa	Predicted RBP	5.76	□□□□□ -1.49
ROT1	YMR200W	RKM4	Q12504	494 aa		5.76	□□□□□ -1.49
ROT1	YMR200W	MPH2	P0CD99	609 aa		5.75	□□□□□ -1.49
ROT1	YMR200W	CDC20	P26309	610 aa		5.75	□□□□□ -1.49
ROT1	YMR200W	SHM2	P37291	469 aa	Known RBP	5.75	□□□□□ -1.49
ROT1	YMR200W	GEM1	P39722	662 aa		5.75	□□□□□ -1.49
ROT1	YMR200W	PEA2	P40091	420 aa		5.75	□□□□□ -1.49
ROT1	YMR200W	GPP1	P41277	250 aa	Known RBP	5.75	□□□□□ -1.49
ROT1	YMR200W	MPP10	P47083	593 aa	Known RBP	5.75	□□□□□ -1.49
ROT1	YMR200W	MTC3	P53077	123 aa		5.75	□□□□□ -1.49
ROT1	YMR200W	GTF1	P53260	183 aa	Predicted RBP	5.75	□□□□□ -1.49
ROT1	YMR200W	UBX4	P54730	416 aa		5.75	□□□□□ -1.49
ROT1	YMR200W	MSC2	Q03455	724 aa		5.75	□□□□□ -1.49
ROT1	YMR200W	MPD2	Q99316	277 aa		5.75	□□□□□ -1.49
ROT1	YMR200W	INH1	P01097	85 aa		5.74	□□□□□ -1.49
ROT1	YMR200W	SST2	P11972	698 aa	Known RBP	5.74	□□□□□ -1.49
ROT1	YMR200W	ARE1	P25628	610 aa		5.74	□□□□□ -1.49
ROT1	YMR200W	MRS6	P32864	603 aa	Known RBP	5.74	□□□□□ -1.49
ROT1	YMR200W	DOM34	P33309	386 aa		5.74	□□□□□ -1.49
ROT1	YMR200W	YKL107W	P34251	309 aa		5.74	□□□□□ -1.49
ROT1	YMR200W	GCV2	P49095	1034 aa		5.74	□□□□□ -1.49
ROT1	YMR200W	MEH1	Q02205	184 aa		5.74	□□□□□ -1.49
ROT1	YMR200W	UME1	Q03010	460 aa		5.74	□□□□□ -1.49
ROT1	YMR200W	FMP25	Q08023	583 aa		5.74	□□□□□ -1.49
ROT1	YMR200W	GPB1	Q08886	897 aa		5.74	□□□□□ -1.49
ROT1	YMR200W	ABD1	P32783	436 aa	Predicted RBP	5.73	□□□□□ -1.49
ROT1	YMR200W	TFC3	P34111	1160 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	YKL151C	P36059	337 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	JNM1	P36224	373 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	RRT14	P40470	206 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	HUL4	P40985	892 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	PEX14	P53112	341 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	SPC105	P53148	917 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	ERP6	P53198	216 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	COG6	P53959	839 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	TGL2	P54857	326 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	UGO1	Q03327	502 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	YAP6	Q03935	383 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	EAF1	Q06337	982 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	ACK1	Q07622	623 aa	Predicted RBP	5.73	□□□□□ -1.49
ROT1	YMR200W	THI73	Q07904	523 aa		5.73	□□□□□ -1.49
ROT1	YMR200W	FAP7	Q12055	197 aa	Predicted RBP	5.73	□□□□□ -1.49
ROT1	YMR200W	SSH4	P32343	579 aa		5.72	□□□□□ -1.49
ROT1	YMR200W	PEX6	P33760	1030 aa		5.72	□□□□□ -1.49
ROT1	YMR200W	LST4	P34239	828 aa		5.72	□□□□□ -1.49
ROT1	YMR200W	RTA1	P53047	317 aa		5.72	□□□□□ -1.49
ROT1	YMR200W	VPS62	P53285	467 aa		5.72	□□□□□ -1.49
ROT1	YMR200W	HRQ1	Q05549	1077 aa		5.72	□□□□□ -1.49
ROT1	YMR200W	TMA10	Q06177	86 aa		5.72	□□□□□ -1.49
ROT1	YMR200W	RXT3	Q07458	294 aa		5.72	□□□□□ -1.49
ROT1	YMR200W	RRI2	Q12348	645 aa		5.72	□□□□□ -1.49
ROT1	YMR200W	FOB1	O13329	566 aa		5.71	□□□□□ -1.5
ROT1	YMR200W	GFD2	P25370	566 aa	Known RBP	5.71	□□□□□ -1.5
ROT1	YMR200W	YBR071W	P38243	211 aa		5.71	□□□□□ -1.5
ROT1	YMR200W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.71	□□□□□ -1.5	not detected
ROT1	YMR200W	HSV2	P50079	448 aa	Predicted RBP	5.71	□□□□□ -1.5
ROT1	YMR200W	YNL193W	P53870	558 aa		5.71	□□□□□ -1.5
ROT1	YMR200W	YNL034W	P53963	612 aa		5.71	□□□□□ -1.5
ROT1	YMR200W	YNL018C	P53976	612 aa		5.71	□□□□□ -1.5
ROT1	YMR200W	HMI1	Q12039	706 aa		5.71	□□□□□ -1.5
ROT1	YMR200W	EMC1	P25574	760 aa		5.7	□□□□□ -1.5
ROT1	YMR200W	EUG1	P32474	517 aa		5.7	□□□□□ -1.5
ROT1	YMR200W	MRP8	P35719	219 aa		5.7	□□□□□ -1.5
ROT1	YMR200W	TRZ1	P36159	838 aa	Predicted RBP	5.7	□□□□□ -1.5
ROT1	YMR200W	IRR1	P40541	1150 aa		5.7	□□□□□ -1.5
ROT1	YMR200W	PIP2	P52960	996 aa		5.7	□□□□□ -1.5
ROT1	YMR200W	GPG1	P53130	126 aa		5.7	□□□□□ -1.5
ROT1	YMR200W	TAF8	Q03750	510 aa		5.7	□□□□□ -1.5
ROT1	YMR200W	DAL5	P15365	543 aa		5.69	□□□□□ -1.5
ROT1	YMR200W	SWI3	P32591	825 aa		5.69	□□□□□ -1.5
ROT1	YMR200W	PTH2	P34222	208 aa		5.69	□□□□□ -1.5
ROT1	YMR200W	MND2	P40577	368 aa		5.69	□□□□□ -1.5
ROT1	YMR200W	PBP1	P53297	722 aa	Known RBP	5.69	□□□□□ -1.5
ROT1	YMR200W	SDA1	P53313	767 aa	Known RBP	5.69	□□□□□ -1.5
ROT1	YMR200W	PSK2	Q08217	1101 aa		5.69	□□□□□ -1.5
ROT1	YMR200W	TRE2	Q08693	809 aa		5.69	□□□□□ -1.5
ROT1	YMR200W	HSC82	P15108	705 aa	Known RBP	5.68	□□□□□ -1.5
ROT1	YMR200W	AGP1	P25376	633 aa		5.68	□□□□□ -1.5
ROT1	YMR200W	PLC1	P32383	869 aa		5.68	□□□□□ -1.5
ROT1	YMR200W	TFC4	P33339	1025 aa		5.68	□□□□□ -1.5
ROT1	YMR200W	BET3	P36149	193 aa		5.68	□□□□□ -1.5
ROT1	YMR200W	EXO84	P38261	753 aa		5.68	□□□□□ -1.5
ROT1	YMR200W	PFD1	P46988	109 aa		5.68	□□□□□ -1.5
ROT1	YMR200W	CWC22	P53333	577 aa	Known RBP	5.68	□□□□□ -1.5
ROT1	YMR200W	MET14	Q02196	202 aa		5.68	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 9.5 ms