RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	NOP58	Q12499	511 aa	Known RBP	5.13	□□□□□ -1.59
UBI4	YLL039C	MYO1	P08964	1928 aa		5.13	□□□□□ -1.59
UBI4	YLL039C	SAM1	P10659	382 aa	Known RBP	5.12	□□□□□ -1.59
UBI4	YLL039C	SRS2	P12954	1174 aa		5.12	□□□□□ -1.59
UBI4	YLL039C	SEC20	P28791	383 aa		5.12	□□□□□ -1.59
UBI4	YLL039C	EUG1	P32474	517 aa		5.12	□□□□□ -1.59
UBI4	YLL039C	KTR2	P33550	425 aa		5.12	□□□□□ -1.59
UBI4	YLL039C	TGL1	P34163	548 aa		5.12	□□□□□ -1.59
UBI4	YLL039C	BMH2	P34730	273 aa	Known RBP	5.12	□□□□□ -1.59
UBI4	YLL039C	YKR018C	P36114	725 aa		5.12	□□□□□ -1.59
UBI4	YLL039C	EPL1	P43572	832 aa		5.12	□□□□□ -1.59
UBI4	YLL039C	ATG1	P53104	897 aa		5.12	□□□□□ -1.59
UBI4	YLL039C	GUP1	P53154	560 aa		5.12	□□□□□ -1.59
UBI4	YLL039C	TMA64	Q04600	565 aa	Known RBP	5.12	□□□□□ -1.59
UBI4	YLL039C	MET6	P05694	767 aa	Known RBP	5.11	□□□□□ -1.59
UBI4	YLL039C	UTR4	P32626	227 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	YHL017W	P38745	532 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	TPM2	P40414	161 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	PCI8	P40512	444 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	HXT8	P40886	569 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	SPO74	P45819	413 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	ASE1	P50275	885 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	YDR341C	Q05506	607 aa	Known RBP	5.11	□□□□□ -1.59
UBI4	YLL039C	YLR407W	Q06070	228 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	SPH1	Q06160	661 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	MAG2	Q06436	670 aa	Known RBP	5.11	□□□□□ -1.59
UBI4	YLL039C	PSK2	Q08217	1101 aa		5.11	□□□□□ -1.59
UBI4	YLL039C	CYC7	P00045	113 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	CIT1	P00890	479 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	RPL19A	P0CX82	189 aa	Known RBP	5.1	□□□□□ -1.59
UBI4	YLL039C	RPL19B	P0CX83	189 aa	Predicted RBP	5.1	□□□□□ -1.59
UBI4	YLL039C	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.1	□□□□□ -1.59	not detected
UBI4	YLL039C	RPL8A	P17076	256 aa	Known RBP	5.1	□□□□□ -1.59
UBI4	YLL039C	HCA4	P20448	770 aa	Known RBP	5.1	□□□□□ -1.59
UBI4	YLL039C	SWI4	P25302	1093 aa	Known RBP	5.1	□□□□□ -1.59
UBI4	YLL039C	VPS24	P36095	224 aa	Known RBP	5.1	□□□□□ -1.59
UBI4	YLL039C	RXT2	P38255	430 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	AIM46	P38885	310 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	CCT3	P39077	534 aa	Known RBP	5.1	□□□□□ -1.59
UBI4	YLL039C	LEM3	P42838	414 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	RGD2	P43556	714 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	CTF18	P49956	741 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	FMS1	P50264	508 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	YGR125W	P53273	1036 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	NCE103	P53615	221 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	DUS4	Q06063	367 aa		5.1	□□□□□ -1.59
UBI4	YLL039C	VIP1	Q06685	1146 aa	Known RBP	5.1	□□□□□ -1.59
UBI4	YLL039C	LSP1	Q12230	341 aa	Known RBP	5.1	□□□□□ -1.59
UBI4	YLL039C	VPS13	Q07878	3144 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	5.09	□□□□□ -1.59	not detected
UBI4	YLL039C	FUS1	P11710	512 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	CBP3	P21560	335 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	PWP2	P25635	923 aa	Known RBP	5.09	□□□□□ -1.59
UBI4	YLL039C	SRP40	P32583	406 aa	Predicted RBP	5.09	□□□□□ -1.59
UBI4	YLL039C	SHP1	P34223	423 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	MCR1	P36060	302 aa	Known RBP	5.09	□□□□□ -1.59
UBI4	YLL039C	NDT80	P38830	627 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	RPN10	P38886	268 aa	Known RBP	5.09	□□□□□ -1.59
UBI4	YLL039C	MXR1	P40029	184 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	BUD6	P41697	788 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	LIF1	P53150	421 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	GDE1	Q02979	1223 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	YML083C	Q04526	418 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	DUS3	Q06053	668 aa	Known RBP	5.09	□□□□□ -1.59
UBI4	YLL039C	GUD1	Q07729	489 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	TAO3	P40468	2376 aa		5.09	□□□□□ -1.59
UBI4	YLL039C	TY1B-A	O13527	1196 aa	Known RBP	5.08	□□□□□ -1.6
UBI4	YLL039C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	5.08	□□□□□ -1.6	not detected
UBI4	YLL039C	ELM1	P32801	640 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	UGA4	P32837	571 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	RGT1	P32862	1170 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	FIR1	P40020	876 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	PSF2	P40359	213 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	ENT3	P47160	408 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	YGL138C	P53122	345 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	BUL2	Q03758	920 aa	Known RBP	5.08	□□□□□ -1.6
UBI4	YLL039C	VPS20	Q04272	221 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	ISA1	Q07821	250 aa	Predicted RBP	5.08	□□□□□ -1.6
UBI4	YLL039C	MET7	Q08645	548 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	ELG1	Q12050	791 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	APC11	Q12157	165 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	ERP3	Q12403	225 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	CEX1	Q12453	761 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	ECM29	P38737	1868 aa		5.08	□□□□□ -1.6
UBI4	YLL039C	HSP82	P02829	709 aa	Known RBP	5.07	□□□□□ -1.6
UBI4	YLL039C	CDC6	P09119	513 aa		5.07	□□□□□ -1.6
UBI4	YLL039C	VPS1	P21576	704 aa	Known RBP	5.07	□□□□□ -1.6
UBI4	YLL039C	TKL1	P23254	680 aa	Known RBP	5.07	□□□□□ -1.6
UBI4	YLL039C	SEC8	P32855	1065 aa		5.07	□□□□□ -1.6
UBI4	YLL039C	MAE1	P36013	669 aa	Known RBP	5.07	□□□□□ -1.6
UBI4	YLL039C	SEA4	P38164	1038 aa		5.07	□□□□□ -1.6
UBI4	YLL039C	PTA1	Q01329	785 aa	Predicted RBP	5.07	□□□□□ -1.6
UBI4	YLL039C	ULP1	Q02724	621 aa		5.07	□□□□□ -1.6
UBI4	YLL039C	SLD5	Q03406	294 aa		5.07	□□□□□ -1.6
UBI4	YLL039C	ICL2	Q12031	575 aa		5.07	□□□□□ -1.6
UBI4	YLL039C	YPL150W	Q12152	901 aa		5.07	□□□□□ -1.6
UBI4	YLL039C	RKM4	Q12504	494 aa		5.07	□□□□□ -1.6
UBI4	YLL039C	CPA2	P03965	1118 aa	Known RBP	5.06	□□□□□ -1.6
UBI4	YLL039C	PCT1	P13259	424 aa		5.06	□□□□□ -1.6
UBI4	YLL039C	MCM4	P30665	933 aa	Known RBP	5.06	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 20.5 ms