RNA–Protein interactions for RNA: YKR092C

SRP40, Transcript of Nucleolar serine-rich protein, yeast

Gene SRP40, Length 1,221 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SRP40	YKR092C	ERR1	P0CX10	437 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	ERR2	P0CX11	437 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	PHO8	P11491	566 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	MSD1	P15179	658 aa	Known RBP	4.71	□□□□□ -1.66
SRP40	YKR092C	REC104	P33323	182 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	THI80	P35202	319 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	TSL1	P38427	1098 aa	Known RBP	4.71	□□□□□ -1.66
SRP40	YKR092C	YAP1801	P38856	637 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	NPP2	P39997	493 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	YER158C	P40095	573 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	TOK1	P40310	691 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	TAF1	P46677	1066 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	CCM1	P48237	864 aa	Predicted RBP	4.71	□□□□□ -1.66
SRP40	YKR092C	PIL1	P53252	339 aa	Known RBP	4.71	□□□□□ -1.66
SRP40	YKR092C	SFB2	P53953	876 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	MSC2	Q03455	724 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	YOR352W	Q08816	343 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	YLR125W	Q12138	136 aa		4.71	□□□□□ -1.66
SRP40	YKR092C	TOP2	P06786	1428 aa	Known RBP	4.71	□□□□□ -1.66
SRP40	YKR092C	CMP2	P14747	604 aa		4.7	□□□□□ -1.66
SRP40	YKR092C	CDC48	P25694	835 aa	Known RBP	4.7	□□□□□ -1.66
SRP40	YKR092C	ECM21	P38167	1117 aa	Known RBP	4.7	□□□□□ -1.66
SRP40	YKR092C	NMD2	P38798	1089 aa	Known RBP	4.7	□□□□□ -1.66
SRP40	YKR092C	SNO2	P53823	222 aa		4.7	□□□□□ -1.66
SRP40	YKR092C	BUL2	Q03758	920 aa	Known RBP	4.7	□□□□□ -1.66
SRP40	YKR092C	YSH1	Q06224	779 aa	Predicted RBP	4.7	□□□□□ -1.66
SRP40	YKR092C	BRE1	Q07457	700 aa	Known RBP	4.7	□□□□□ -1.66
SRP40	YKR092C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.7	□□□□□ -1.66	not detected
SRP40	YKR092C	YDL177C	Q12257	170 aa		4.7	□□□□□ -1.66
SRP40	YKR092C	RIB2	Q12362	591 aa	Known RBP	4.7	□□□□□ -1.66
SRP40	YKR092C	SPT7	P35177	1332 aa		4.7	□□□□□ -1.66
SRP40	YKR092C	RPO31	P04051	1460 aa		4.69	□□□□□ -1.66
SRP40	YKR092C	MET6	P05694	767 aa	Known RBP	4.69	□□□□□ -1.66
SRP40	YKR092C	RPC82	P32349	654 aa		4.69	□□□□□ -1.66
SRP40	YKR092C	MFT1	P33441	392 aa	Known RBP	4.69	□□□□□ -1.66
SRP40	YKR092C	ERT1	P38140	529 aa		4.69	□□□□□ -1.66
SRP40	YKR092C	HSV2	P50079	448 aa	Predicted RBP	4.69	□□□□□ -1.66
SRP40	YKR092C	BUD21	Q08492	214 aa	Predicted RBP	4.69	□□□□□ -1.66
SRP40	YKR092C	SEC3	P33332	1336 aa	Known RBP	4.69	□□□□□ -1.66
SRP40	YKR092C	PAN1	P32521	1480 aa		4.69	□□□□□ -1.66
SRP40	YKR092C	GAL10	P04397	699 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	PRP6	P19735	899 aa	Predicted RBP	4.68	□□□□□ -1.66
SRP40	YKR092C	SRM1	P21827	482 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	THI4	P32318	326 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	SPC42	P36094	363 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	AIM3	P38266	947 aa	Known RBP	4.68	□□□□□ -1.66
SRP40	YKR092C	GIP4	P39732	760 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	ZDS1	P50111	915 aa	Known RBP	4.68	□□□□□ -1.66
SRP40	YKR092C	YKE2	P52553	114 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	YGL081W	P53156	320 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	ALG12	P53730	551 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	MRPL22	P53881	309 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	SIZ1	Q04195	904 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	SGD1	Q06132	899 aa		4.68	□□□□□ -1.66
SRP40	YKR092C	GEA1	P47102	1408 aa	Predicted RBP	4.67	□□□□□ -1.66
SRP40	YKR092C	ENA1	P13587	1091 aa		4.67	□□□□□ -1.66
SRP40	YKR092C	RRP14	P36080	434 aa	Known RBP	4.67	□□□□□ -1.66
SRP40	YKR092C	YBR238C	P38330	731 aa	Known RBP	4.67	□□□□□ -1.66
SRP40	YKR092C	GDH3	P39708	457 aa		4.67	□□□□□ -1.66
SRP40	YKR092C	ZRG8	P40021	1076 aa		4.67	□□□□□ -1.66
SRP40	YKR092C	ENA2	Q01896	1091 aa		4.67	□□□□□ -1.66
SRP40	YKR092C	ROT1	Q03691	256 aa		4.67	□□□□□ -1.66
SRP40	YKR092C	ENA5	Q12691	1091 aa		4.67	□□□□□ -1.66
SRP40	YKR092C	TSC11	P40061	1430 aa		4.66	□□□□□ -1.66
SRP40	YKR092C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
SRP40	YKR092C	PET111	P08468	800 aa		4.66	□□□□□ -1.66
SRP40	YKR092C	SRP101	P32916	621 aa		4.66	□□□□□ -1.66
SRP40	YKR092C	LAM1	P38851	1228 aa		4.66	□□□□□ -1.66
SRP40	YKR092C	ALG2	P43636	503 aa		4.66	□□□□□ -1.66
SRP40	YKR092C	YJR008W	P47085	338 aa		4.66	□□□□□ -1.66
SRP40	YKR092C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
SRP40	YKR092C	PLB2	Q03674	706 aa		4.66	□□□□□ -1.66
SRP40	YKR092C	GIR2	Q03768	265 aa	Predicted RBP	4.66	□□□□□ -1.66
SRP40	YKR092C	KOG1	P38873	1557 aa		4.65	□□□□□ -1.66
SRP40	YKR092C	NOT3	P06102	836 aa	Known RBP	4.65	□□□□□ -1.67
SRP40	YKR092C	HSF1	P10961	833 aa		4.65	□□□□□ -1.67
SRP40	YKR092C	RFA1	P22336	621 aa	Known RBP	4.65	□□□□□ -1.67
SRP40	YKR092C	FLR1	P38124	548 aa		4.65	□□□□□ -1.67
SRP40	YKR092C	NIT3	P49954	291 aa		4.65	□□□□□ -1.67
SRP40	YKR092C	YGR012W	P53206	393 aa		4.65	□□□□□ -1.67
SRP40	YKR092C	PBP1	P53297	722 aa	Known RBP	4.65	□□□□□ -1.67
SRP40	YKR092C	GRX3	Q03835	250 aa		4.65	□□□□□ -1.67
SRP40	YKR092C	POB3	Q04636	552 aa	Known RBP	4.65	□□□□□ -1.67
SRP40	YKR092C	CDA1	Q06702	301 aa		4.65	□□□□□ -1.67
SRP40	YKR092C	ENV7	Q12003	364 aa		4.65	□□□□□ -1.67
SRP40	YKR092C	YCF1	P39109	1515 aa	Known RBP	4.65	□□□□□ -1.67
SRP40	YKR092C	PEP1	P32319	1579 aa		4.65	□□□□□ -1.67
SRP40	YKR092C	PDR15	Q04182	1529 aa	Known RBP	4.64	□□□□□ -1.67
SRP40	YKR092C	DAL5	P15365	543 aa		4.64	□□□□□ -1.67
SRP40	YKR092C	RAD53	P22216	821 aa		4.64	□□□□□ -1.67
SRP40	YKR092C	MEF2	P39677	819 aa		4.64	□□□□□ -1.67
SRP40	YKR092C	SEC27	P41811	889 aa	Known RBP	4.64	□□□□□ -1.67
SRP40	YKR092C	PSP2	P50109	593 aa	Known RBP	4.64	□□□□□ -1.67
SRP40	YKR092C	GTF1	P53260	183 aa	Predicted RBP	4.64	□□□□□ -1.67
SRP40	YKR092C	VPS30	Q02948	557 aa		4.64	□□□□□ -1.67
SRP40	YKR092C	MSH2	P25847	964 aa		4.63	□□□□□ -1.67
SRP40	YKR092C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
SRP40	YKR092C	EMC3	P36039	253 aa		4.63	□□□□□ -1.67
SRP40	YKR092C	MND2	P40577	368 aa		4.63	□□□□□ -1.67
SRP40	YKR092C	GYP8	P43570	497 aa		4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 137.5 ms