RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT3	YDR392W	FAR11	P53917	953 aa		6.19	□□□□□ -1.42
SPT3	YDR392W	SNA3	P14359	133 aa		6.18	□□□□□ -1.42
SPT3	YDR392W	YAT1	P80235	687 aa		6.18	□□□□□ -1.42
SPT3	YDR392W	GIC2	Q06648	383 aa		6.18	□□□□□ -1.42
SPT3	YDR392W	MPP10	P47083	593 aa	Known RBP	6.17	□□□□□ -1.42
SPT3	YDR392W	CSL4	P53859	292 aa	Predicted RBP	6.17	□□□□□ -1.42
SPT3	YDR392W	HAS1	Q03532	505 aa	Known RBP	6.17	□□□□□ -1.42
SPT3	YDR392W	GLO4	Q12320	285 aa		6.17	□□□□□ -1.42
SPT3	YDR392W	DUR1,2	P32528	1835 aa	Known RBP	6.17	□□□□□ -1.42
SPT3	YDR392W	RPS9A	O13516	197 aa	Known RBP	6.16	□□□□□ -1.42
SPT3	YDR392W	PRC1	P00729	532 aa		6.16	□□□□□ -1.42
SPT3	YDR392W	ELM1	P32801	640 aa		6.16	□□□□□ -1.42
SPT3	YDR392W	LEU5	P38702	357 aa		6.16	□□□□□ -1.42
SPT3	YDR392W	CIT3	P43635	486 aa		6.16	□□□□□ -1.42
SPT3	YDR392W	HDA1	P53973	706 aa		6.16	□□□□□ -1.42
SPT3	YDR392W	PNG1	Q02890	363 aa		6.16	□□□□□ -1.42
SPT3	YDR392W	RRD2	Q12461	358 aa		6.16	□□□□□ -1.42
SPT3	YDR392W	ERS1	P17261	260 aa		6.15	□□□□□ -1.42
SPT3	YDR392W	PYC2	P32327	1180 aa	Known RBP	6.15	□□□□□ -1.42
SPT3	YDR392W	SFP1	P32432	683 aa		6.15	□□□□□ -1.42
SPT3	YDR392W	CHS7	P38843	316 aa		6.15	□□□□□ -1.42
SPT3	YDR392W	ALD5	P40047	520 aa	Known RBP	6.15	□□□□□ -1.42
SPT3	YDR392W	SDS3	P40505	327 aa		6.15	□□□□□ -1.42
SPT3	YDR392W	YML037C	Q03703	340 aa		6.15	□□□□□ -1.42
SPT3	YDR392W	SEC16	P48415	2195 aa	Known RBP	6.14	□□□□□ -1.43
SPT3	YDR392W	RPB10	P22139	70 aa		6.14	□□□□□ -1.43
SPT3	YDR392W	DBP2	P24783	546 aa	Known RBP	6.14	□□□□□ -1.43
SPT3	YDR392W	AKL1	P38080	1108 aa	Known RBP	6.14	□□□□□ -1.43
SPT3	YDR392W	OPT1	P40897	799 aa		6.14	□□□□□ -1.43
SPT3	YDR392W	ISA1	Q07821	250 aa	Predicted RBP	6.14	□□□□□ -1.43
SPT3	YDR392W	YLL054C	Q12244	843 aa		6.14	□□□□□ -1.43
SPT3	YDR392W	SNF1	P06782	633 aa	Known RBP	6.13	□□□□□ -1.43
SPT3	YDR392W	HIS5	P07172	385 aa		6.13	□□□□□ -1.43
SPT3	YDR392W	APE1	P14904	514 aa		6.13	□□□□□ -1.43
SPT3	YDR392W	FUB1	P25659	250 aa		6.13	□□□□□ -1.43
SPT3	YDR392W	SCT1	P32784	759 aa		6.13	□□□□□ -1.43
SPT3	YDR392W	PEX28	P38848	579 aa		6.13	□□□□□ -1.43
SPT3	YDR392W	TVP23	P38962	199 aa		6.13	□□□□□ -1.43
SPT3	YDR392W	FUN12	P39730	1002 aa	Known RBP	6.13	□□□□□ -1.43
SPT3	YDR392W	YFH7	P43591	353 aa		6.13	□□□□□ -1.43
SPT3	YDR392W	SAC3	P46674	1301 aa		6.13	□□□□□ -1.43
SPT3	YDR392W	ECM32	P32644	1121 aa	Known RBP	6.12	□□□□□ -1.43
SPT3	YDR392W	SMY2	P32909	740 aa	Known RBP	6.12	□□□□□ -1.43
SPT3	YDR392W	OCA5	P38738	679 aa		6.12	□□□□□ -1.43
SPT3	YDR392W	MSH4	P40965	878 aa	Predicted RBP	6.12	□□□□□ -1.43
SPT3	YDR392W	ZAP1	P47043	880 aa		6.12	□□□□□ -1.43
SPT3	YDR392W	NSE1	Q07913	336 aa		6.12	□□□□□ -1.43
SPT3	YDR392W	YOR223W	Q12015	292 aa		6.12	□□□□□ -1.43
SPT3	YDR392W	NSI1	Q12457	570 aa		6.12	□□□□□ -1.43
SPT3	YDR392W	SCS3	P53012	380 aa		6.11	□□□□□ -1.43
SPT3	YDR392W	PCL8	Q08966	492 aa		6.11	□□□□□ -1.43
SPT3	YDR392W	UTR4	P32626	227 aa		6.1	□□□□□ -1.43
SPT3	YDR392W	APN2	P38207	520 aa		6.1	□□□□□ -1.43
SPT3	YDR392W	BOL3	P39724	118 aa		6.1	□□□□□ -1.43
SPT3	YDR392W	NUG1	P40010	520 aa	Known RBP	6.1	□□□□□ -1.43
SPT3	YDR392W	NOP2	P40991	618 aa	Known RBP	6.1	□□□□□ -1.43
SPT3	YDR392W	MMM1	P41800	426 aa		6.1	□□□□□ -1.43
SPT3	YDR392W	CDC48	P25694	835 aa	Known RBP	6.09	□□□□□ -1.43
SPT3	YDR392W	COY1	P34237	679 aa		6.09	□□□□□ -1.43
SPT3	YDR392W	NSE3	Q05541	303 aa		6.09	□□□□□ -1.43
SPT3	YDR392W	YOR059C	Q08448	450 aa	Known RBP	6.09	□□□□□ -1.43
SPT3	YDR392W	HRP1	Q99383	534 aa	Known RBP	6.09	□□□□□ -1.43
SPT3	YDR392W	YLR422W	Q06409	1932 aa		6.08	□□□□□ -1.44
SPT3	YDR392W	CHO2	P05374	869 aa	Known RBP	6.08	□□□□□ -1.44
SPT3	YDR392W	KRS1	P15180	591 aa	Known RBP	6.08	□□□□□ -1.44
SPT3	YDR392W	RPT3	P33298	428 aa	Known RBP	6.08	□□□□□ -1.44
SPT3	YDR392W	ECM2	P38241	364 aa	Known RBP	6.08	□□□□□ -1.44
SPT3	YDR392W	TIF4631	P39935	952 aa	Known RBP	6.08	□□□□□ -1.44
SPT3	YDR392W	UBP5	P39944	805 aa		6.08	□□□□□ -1.44
SPT3	YDR392W	MMF1	P40185	145 aa	Known RBP	6.08	□□□□□ -1.44
SPT3	YDR392W	GCV1	P48015	400 aa		6.08	□□□□□ -1.44
SPT3	YDR392W	STE4	P18851	423 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	PRP9	P19736	530 aa	Known RBP	6.07	□□□□□ -1.44
SPT3	YDR392W	MCM4	P30665	933 aa	Known RBP	6.07	□□□□□ -1.44
SPT3	YDR392W	ECL1	P48235	211 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	TAM41	P53230	385 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	UFD2	P54860	961 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	CTR9	P89105	1077 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	SDH1	Q00711	640 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	STP1	Q00947	519 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	SLD5	Q03406	294 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	YDL124W	Q07551	312 aa	Known RBP	6.07	□□□□□ -1.44
SPT3	YDR392W	TRM11	Q12463	433 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	LAA1	P39526	2014 aa		6.07	□□□□□ -1.44
SPT3	YDR392W	BRR2	P32639	2163 aa	Known RBP	6.07	□□□□□ -1.44
SPT3	YDR392W	RPL43A	P0CX25	92 aa	Known RBP	6.06	□□□□□ -1.44
SPT3	YDR392W	RPL43B	P0CX26	92 aa		6.06	□□□□□ -1.44
SPT3	YDR392W	SEC15	P22224	910 aa		6.06	□□□□□ -1.44
SPT3	YDR392W	PTP1	P25044	335 aa		6.06	□□□□□ -1.44
SPT3	YDR392W	CCC2	P38995	1004 aa		6.06	□□□□□ -1.44
SPT3	YDR392W	ALD6	P54115	500 aa	Known RBP	6.06	□□□□□ -1.44
SPT3	YDR392W	RSC4	Q02206	625 aa		6.06	□□□□□ -1.44
SPT3	YDR392W	GCD1	P09032	578 aa	Predicted RBP	6.05	□□□□□ -1.44
SPT3	YDR392W	SGF29	P25554	259 aa		6.05	□□□□□ -1.44
SPT3	YDR392W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	6.05	□□□□□ -1.44	not detected
SPT3	YDR392W	CST26	P38226	397 aa		6.05	□□□□□ -1.44
SPT3	YDR392W	TAF1	P46677	1066 aa		6.05	□□□□□ -1.44
SPT3	YDR392W	YGL039W	P53183	348 aa	Known RBP	6.05	□□□□□ -1.44
SPT3	YDR392W	PIB2	P53191	635 aa		6.05	□□□□□ -1.44
SPT3	YDR392W	DOT1	Q04089	582 aa	Known RBP	6.05	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 54.3 ms