RNA–Protein interactions for RNA: YDL229W

SSB1, Transcript of Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, yeast

Gene SSB1, Length 1,842 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSB1	YDL229W	UTP11	P34247	250 aa	Predicted RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	SEG2	P34250	1132 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	OCT1	P35999	772 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	PIH1	P38768	344 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	ALD5	P40047	520 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	VID27	P40157	782 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	RPA14	P50106	137 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	FOL2	P51601	243 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	FYV6	P53913	173 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	YPL109C	Q02981	657 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	FAR8	Q05040	523 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	SVF1	Q05515	481 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	ATG17	Q06410	417 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	YLR352W	Q06479	807 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	LOT6	Q07923	191 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
SSB1	YDL229W	PGC1	Q08959	321 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	TRM8	Q12009	286 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	MSB4	Q12317	492 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	GEA2	P39993	1459 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	GEA1	P47102	1408 aa	Predicted RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	ADE8	P04161	214 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	SPS1	P08458	490 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	NCP1	P16603	691 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	PHO3	P24031	467 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	HEM3	P28789	327 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	RPT1	P33299	467 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	MTC2	P34246	357 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	YKL050C	P35736	922 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	BOI1	P38041	980 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	AMN1	P38285	549 aa	Predicted RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	SWC5	P38326	303 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	GUA1	P38625	525 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	NOP16	P40007	231 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	QDR2	P40474	542 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	AGE2	P40529	298 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	STB4	P50104	949 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	ATP22	P50273	684 aa	Predicted RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	SAP4	P53036	818 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	ALG12	P53730	551 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	RPM2	Q02773	1202 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	MFM1	Q02783	413 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	RRP17	Q04031	235 aa	Predicted RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	POB3	Q04636	552 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	EIS1	Q05050	843 aa	Known RBP	4.6	□□□□□ -1.67
SSB1	YDL229W	RTP1	Q12751	981 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	YPR089W	O13585	888 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	REP1	P03871	373 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	STE3	P06783	470 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	PRP6	P19735	899 aa	Predicted RBP	4.59	□□□□□ -1.67
SSB1	YDL229W	OSM1	P21375	501 aa	Known RBP	4.59	□□□□□ -1.67
SSB1	YDL229W	VPS1	P21576	704 aa	Known RBP	4.59	□□□□□ -1.67
SSB1	YDL229W	VPS3	P23643	1011 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	RPC53	P25441	422 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	APL1	P27351	700 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	YME1	P32795	747 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	TIF5	P38431	405 aa	Known RBP	4.59	□□□□□ -1.67
SSB1	YDL229W	DSS1	P39112	969 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	YER186C	P40101	306 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	MMM1	P41800	426 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	XKS1	P42826	600 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	ROK1	P45818	564 aa	Predicted RBP	4.59	□□□□□ -1.67
SSB1	YDL229W	SAE2	P46946	345 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	YKR005C	Q02203	525 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	YDR090C	Q03193	310 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	ATG16	Q03818	150 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	EMI2	Q04409	500 aa	Known RBP	4.59	□□□□□ -1.67
SSB1	YDL229W	YCS4	Q06156	1176 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	CDC53	Q12018	815 aa	Known RBP	4.59	□□□□□ -1.67
SSB1	YDL229W	YAH1	Q12184	172 aa	Known RBP	4.59	□□□□□ -1.67
SSB1	YDL229W	RRI2	Q12348	645 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	VPS15	P22219	1454 aa		4.59	□□□□□ -1.67
SSB1	YDL229W	TY3B-G	Q99315	1547 aa		4.59	□□□□□ -1.68
SSB1	YDL229W	JIP3	O13555	125 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	CIT2	P08679	460 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	GCD2	P12754	651 aa	Predicted RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	RGP1	P16664	663 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SSB1	YDL229W	THR1	P17423	357 aa	Known RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	TYR1	P20049	452 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	RDS1	P25611	832 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	SMI1	P32566	505 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	AFG2	P32794	780 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	KES1	P35844	434 aa	Known RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	ERT1	P38140	529 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	KIC1	P38692	1080 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	POP2	P39008	433 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	PCI8	P40512	444 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	VPS53	P47061	822 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	ABZ2	Q03266	374 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SSB1	YDL229W	COX20	Q04935	205 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	SDH5	Q08230	162 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	REX3	Q12090	404 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	BBP1	Q12365	385 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	AUS1	Q08409	1394 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	PDR12	Q02785	1511 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	PRP16	P15938	1071 aa	Predicted RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	SEC2	P17065	759 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	DAP2	P18962	818 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 53.7 ms