RNA–Protein interactions for RNA: YDL043C

PRP11, Transcript of Subunit of the SF3a splicing factor complex, yeast

Gene PRP11, Length 801 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP11	YDL043C	HIR1	P32479	840 aa		4.57	□□□□□ -1.68
PRP11	YDL043C	SFA1	P32771	386 aa		4.57	□□□□□ -1.68
PRP11	YDL043C	OAF1	P39720	1047 aa	Predicted RBP	4.57	□□□□□ -1.68
PRP11	YDL043C	PEA2	P40091	420 aa		4.57	□□□□□ -1.68
PRP11	YDL043C	RRT14	P40470	206 aa		4.57	□□□□□ -1.68
PRP11	YDL043C	IRC24	P40580	263 aa		4.57	□□□□□ -1.68
PRP11	YDL043C	GZF3	P42944	551 aa	Known RBP	4.57	□□□□□ -1.68
PRP11	YDL043C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
PRP11	YDL043C	AIM14	P53109	570 aa		4.57	□□□□□ -1.68
PRP11	YDL043C	VMS1	Q04311	632 aa	Known RBP	4.57	□□□□□ -1.68
PRP11	YDL043C	RCL1	Q08096	367 aa	Predicted RBP	4.57	□□□□□ -1.68
PRP11	YDL043C	GUP2	Q08929	609 aa		4.57	□□□□□ -1.68
PRP11	YDL043C	KAR1	P11927	433 aa		4.56	□□□□□ -1.68
PRP11	YDL043C	ACE2	P21192	770 aa		4.56	□□□□□ -1.68
PRP11	YDL043C	SRO9	P25567	434 aa	Known RBP	4.56	□□□□□ -1.68
PRP11	YDL043C	RPC82	P32349	654 aa		4.56	□□□□□ -1.68
PRP11	YDL043C	CCZ1	P38273	704 aa		4.56	□□□□□ -1.68
PRP11	YDL043C	SFB2	P53953	876 aa		4.56	□□□□□ -1.68
PRP11	YDL043C	YNL034W	P53963	612 aa		4.56	□□□□□ -1.68
PRP11	YDL043C	YNL018C	P53976	612 aa		4.56	□□□□□ -1.68
PRP11	YDL043C	GAS5	Q08193	484 aa		4.56	□□□□□ -1.68
PRP11	YDL043C	NYV1	Q12255	253 aa		4.56	□□□□□ -1.68
PRP11	YDL043C	SST2	P11972	698 aa	Known RBP	4.55	□□□□□ -1.68
PRP11	YDL043C	SAM35	P14693	329 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	RSC6	P25632	483 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	TFC4	P33339	1025 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	FUI1	P38196	639 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	YHL012W	P38709	493 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	RPN10	P38886	268 aa	Known RBP	4.55	□□□□□ -1.68
PRP11	YDL043C	NIT2	P47016	307 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	HXT16	P47185	567 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	BUD9	P53226	547 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	NOG2	P53742	486 aa	Known RBP	4.55	□□□□□ -1.68
PRP11	YDL043C	TLG1	Q03322	224 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	CEF1	Q03654	590 aa	Predicted RBP	4.55	□□□□□ -1.68
PRP11	YDL043C	NHX1	Q04121	633 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	YPR196W	Q06595	470 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	YVC1	Q12324	675 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	MPD2	Q99316	277 aa		4.55	□□□□□ -1.68
PRP11	YDL043C	DAL7	P21826	554 aa		4.54	□□□□□ -1.68
PRP11	YDL043C	AEP2	P22136	580 aa		4.54	□□□□□ -1.68
PRP11	YDL043C	MDL2	P33311	773 aa		4.54	□□□□□ -1.68
PRP11	YDL043C	MNN11	P46985	422 aa	Known RBP	4.54	□□□□□ -1.68
PRP11	YDL043C	ALY2	P47029	1046 aa		4.54	□□□□□ -1.68
PRP11	YDL043C	MPP10	P47083	593 aa	Known RBP	4.54	□□□□□ -1.68
PRP11	YDL043C	ECM16	Q04217	1267 aa	Known RBP	4.54	□□□□□ -1.68
PRP11	YDL043C	YDR338C	Q05497	695 aa		4.54	□□□□□ -1.68
PRP11	YDL043C	RSB1	Q08417	382 aa		4.54	□□□□□ -1.68
PRP11	YDL043C	OSW2	Q12202	724 aa		4.54	□□□□□ -1.68
PRP11	YDL043C	PIF1	P07271	859 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	RFA1	P22336	621 aa	Known RBP	4.53	□□□□□ -1.68
PRP11	YDL043C	MIH1	P23748	554 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	CCR4	P31384	837 aa	Known RBP	4.53	□□□□□ -1.68
PRP11	YDL043C	DID4	P36108	232 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	TRZ1	P36159	838 aa	Predicted RBP	4.53	□□□□□ -1.68
PRP11	YDL043C	TAT1	P38085	619 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	DOT6	P40059	670 aa	Known RBP	4.53	□□□□□ -1.68
PRP11	YDL043C	GPP2	P40106	250 aa	Known RBP	4.53	□□□□□ -1.68
PRP11	YDL043C	CCT5	P40413	562 aa	Known RBP	4.53	□□□□□ -1.68
PRP11	YDL043C	HOS4	P40480	1083 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	RLP7	P40693	322 aa	Known RBP	4.53	□□□□□ -1.68
PRP11	YDL043C	HFM1	P51979	1187 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	TAD1	P53065	400 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	ATG16	Q03818	150 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	RSC58	Q07979	502 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	NBA1	Q08229	501 aa	Known RBP	4.53	□□□□□ -1.68
PRP11	YDL043C	INO80	P53115	1489 aa		4.53	□□□□□ -1.68
PRP11	YDL043C	AI3	P03877	415 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	YEF3	P16521	1044 aa	Known RBP	4.52	□□□□□ -1.69
PRP11	YDL043C	TRX2	P22803	104 aa	Known RBP	4.52	□□□□□ -1.69
PRP11	YDL043C	YCL002C	P25565	263 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	DPB3	P27344	201 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	HSL7	P38274	827 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	YAP1801	P38856	637 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	RET2	P43621	546 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	YGR153W	P48238	217 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	PIP2	P52960	996 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	PIL1	P53252	339 aa	Known RBP	4.52	□□□□□ -1.69
PRP11	YDL043C	PBP1	P53297	722 aa	Known RBP	4.52	□□□□□ -1.69
PRP11	YDL043C	HDA1	P53973	706 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	SDH1	Q00711	640 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	MET14	Q02196	202 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	LRS4	Q04087	347 aa	Known RBP	4.52	□□□□□ -1.69
PRP11	YDL043C	YSH1	Q06224	779 aa	Predicted RBP	4.52	□□□□□ -1.69
PRP11	YDL043C	SVS1	Q12254	260 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	YBR182C-A	Q8TGU6	64 aa		4.52	□□□□□ -1.69
PRP11	YDL043C	SPT7	P35177	1332 aa		4.51	□□□□□ -1.69
PRP11	YDL043C	DIF1	O13577	133 aa		4.51	□□□□□ -1.69
PRP11	YDL043C	ENA1	P13587	1091 aa		4.51	□□□□□ -1.69
PRP11	YDL043C	URA1	P28272	314 aa	Predicted RBP	4.51	□□□□□ -1.69
PRP11	YDL043C	CYS3	P31373	394 aa	Known RBP	4.51	□□□□□ -1.69
PRP11	YDL043C	HSP78	P33416	811 aa		4.51	□□□□□ -1.69
PRP11	YDL043C	ECM21	P38167	1117 aa	Known RBP	4.51	□□□□□ -1.69
PRP11	YDL043C	TDA3	P38758	523 aa		4.51	□□□□□ -1.69
PRP11	YDL043C	MMM1	P41800	426 aa		4.51	□□□□□ -1.69
PRP11	YDL043C	UBC9	P50623	157 aa	Predicted RBP	4.51	□□□□□ -1.69
PRP11	YDL043C	YGR021W	P53212	290 aa		4.51	□□□□□ -1.69
PRP11	YDL043C	UBX4	P54730	416 aa		4.51	□□□□□ -1.69
PRP11	YDL043C	ENA2	Q01896	1091 aa		4.51	□□□□□ -1.69
PRP11	YDL043C	ECM9	Q02202	377 aa		4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms