RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	TUB3	P09734	445 aa	Known RBP	5.63	□□□□□ -1.51
VAR1	Q0140	LYP1	P32487	611 aa		5.63	□□□□□ -1.51
VAR1	Q0140	TRP2	P00899	507 aa	Known RBP	5.62	□□□□□ -1.51
VAR1	Q0140	DMC1	P25453	334 aa		5.62	□□□□□ -1.51
VAR1	Q0140	MPS1	P54199	764 aa		5.62	□□□□□ -1.51
VAR1	Q0140	SSL1	Q04673	461 aa	Predicted RBP	5.62	□□□□□ -1.51
VAR1	Q0140	INO1	P11986	533 aa		5.61	□□□□□ -1.51
VAR1	Q0140	YBR053C	P38235	358 aa		5.61	□□□□□ -1.51
VAR1	Q0140	MRPS35	P53292	345 aa		5.61	□□□□□ -1.51
VAR1	Q0140	EMP70	P32802	667 aa		5.6	□□□□□ -1.51
VAR1	Q0140	DUT1	P33317	147 aa		5.6	□□□□□ -1.51
VAR1	Q0140	YGL176C	P46945	554 aa		5.6	□□□□□ -1.51
VAR1	Q0140	BNA3	P47039	444 aa	Known RBP	5.6	□□□□□ -1.51
VAR1	Q0140	RMD1	Q03441	430 aa		5.6	□□□□□ -1.51
VAR1	Q0140	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	5.6	□□□□□ -1.51	not detected
VAR1	Q0140	SEG1	Q04279	960 aa		5.6	□□□□□ -1.51
VAR1	Q0140	RRP15	Q06511	250 aa	Predicted RBP	5.6	□□□□□ -1.51
VAR1	Q0140	RKM4	Q12504	494 aa		5.6	□□□□□ -1.51
VAR1	Q0140	TYW3	P53177	273 aa		5.59	□□□□□ -1.51
VAR1	Q0140	YGR053C	P53234	283 aa		5.59	□□□□□ -1.51
VAR1	Q0140	HOM2	P13663	365 aa	Known RBP	5.58	□□□□□ -1.52
VAR1	Q0140	EEB1	Q02891	456 aa		5.58	□□□□□ -1.52
VAR1	Q0140	YPR196W	Q06595	470 aa		5.58	□□□□□ -1.52
VAR1	Q0140	CIR2	Q08822	631 aa		5.58	□□□□□ -1.52
VAR1	Q0140	YKL107W	P34251	309 aa		5.57	□□□□□ -1.52
VAR1	Q0140	CDC34	P14682	295 aa		5.56	□□□□□ -1.52
VAR1	Q0140	PTP1	P25044	335 aa		5.56	□□□□□ -1.52
VAR1	Q0140	CBR1	P38626	284 aa	Known RBP	5.56	□□□□□ -1.52
VAR1	Q0140	SDP1	P40479	209 aa		5.56	□□□□□ -1.52
VAR1	Q0140	MEP2	P41948	499 aa		5.56	□□□□□ -1.52
VAR1	Q0140	DAM1	P53267	343 aa		5.56	□□□□□ -1.52
VAR1	Q0140	SWM1	Q12379	170 aa		5.56	□□□□□ -1.52
VAR1	Q0140	FBP1	P09201	348 aa		5.55	□□□□□ -1.52
VAR1	Q0140	STE4	P18851	423 aa		5.55	□□□□□ -1.52
VAR1	Q0140	RPP1	P38786	293 aa		5.54	□□□□□ -1.52
VAR1	Q0140	PET112	P33893	541 aa		5.53	□□□□□ -1.52
VAR1	Q0140	YJL206C	P39529	758 aa		5.53	□□□□□ -1.52
VAR1	Q0140	MET10	P39692	1035 aa		5.53	□□□□□ -1.52
VAR1	Q0140	NET1	P47035	1189 aa		5.53	□□□□□ -1.52
VAR1	Q0140	NOT3	P06102	836 aa	Known RBP	5.52	□□□□□ -1.53
VAR1	Q0140	HEM3	P28789	327 aa		5.52	□□□□□ -1.53
VAR1	Q0140	SNF7	P39929	240 aa	Known RBP	5.52	□□□□□ -1.53
VAR1	Q0140	YEL020C	P39994	560 aa		5.52	□□□□□ -1.53
VAR1	Q0140	SPO20	Q04359	397 aa		5.52	□□□□□ -1.53
VAR1	Q0140	YLR225C	Q05948	407 aa	Known RBP	5.52	□□□□□ -1.53
VAR1	Q0140	IRC13	Q08630	104 aa		5.52	□□□□□ -1.53
VAR1	Q0140	CDC12	P32468	407 aa	Known RBP	5.51	□□□□□ -1.53
VAR1	Q0140	TAF3	Q12297	353 aa		5.51	□□□□□ -1.53
VAR1	Q0140	RSP5	P39940	809 aa	Known RBP	5.5	□□□□□ -1.53
VAR1	Q0140	CCT7	P42943	550 aa	Known RBP	5.5	□□□□□ -1.53
VAR1	Q0140	GYP7	P48365	746 aa		5.5	□□□□□ -1.53
VAR1	Q0140	SGO1	Q08490	590 aa		5.5	□□□□□ -1.53
VAR1	Q0140	OSW1	Q08692	278 aa		5.5	□□□□□ -1.53
VAR1	Q0140	VPS34	P22543	875 aa		5.49	□□□□□ -1.53
VAR1	Q0140	PIN4	P34217	668 aa	Known RBP RIP-Chip data	5.49	□□□□□ -1.53	not detected
VAR1	Q0140	SSL2	Q00578	843 aa		5.49	□□□□□ -1.53
VAR1	Q0140	OYE2	Q03558	400 aa	Known RBP	5.49	□□□□□ -1.53
VAR1	Q0140	NOP1	P15646	327 aa	Known RBP	5.48	□□□□□ -1.53
VAR1	Q0140	ASF1	P32447	279 aa		5.48	□□□□□ -1.53
VAR1	Q0140	RPD3	P32561	433 aa		5.48	□□□□□ -1.53
VAR1	Q0140	MNR2	P35724	969 aa		5.48	□□□□□ -1.53
VAR1	Q0140	PRP4	P20053	465 aa	Known RBP	5.47	□□□□□ -1.53
VAR1	Q0140	STE13	P33894	931 aa		5.47	□□□□□ -1.53
VAR1	Q0140	GGA2	P38817	585 aa	Known RBP	5.46	□□□□□ -1.54
VAR1	Q0140	CTF8	P38877	133 aa		5.46	□□□□□ -1.54
VAR1	Q0140	AMA1	P50082	593 aa		5.46	□□□□□ -1.54
VAR1	Q0140	GIS2	P53849	153 aa	Known RBP RIP-Chip data	5.46	□□□□□ -1.54	not detected
VAR1	Q0140	SMX3	P54999	86 aa	Predicted RBP	5.46	□□□□□ -1.54
VAR1	Q0140	SRP1	Q02821	542 aa	Known RBP	5.46	□□□□□ -1.54
VAR1	Q0140	RPN13	O13563	156 aa		5.45	□□□□□ -1.54
VAR1	Q0140	LTP1	P40347	161 aa		5.45	□□□□□ -1.54
VAR1	Q0140	ESC2	Q06340	456 aa		5.45	□□□□□ -1.54
VAR1	Q0140	YLR149C	Q99296	730 aa		5.44	□□□□□ -1.54
VAR1	Q0140	TSL1	P38427	1098 aa	Known RBP	5.43	□□□□□ -1.54
VAR1	Q0140	YIL108W	P40483	696 aa	Known RBP	5.43	□□□□□ -1.54
VAR1	Q0140	XBP1	P40489	647 aa		5.43	□□□□□ -1.54
VAR1	Q0140	YML020W	Q03722	664 aa		5.43	□□□□□ -1.54
VAR1	Q0140	ABD1	P32783	436 aa	Predicted RBP	5.42	□□□□□ -1.54
VAR1	Q0140	KRI1	P42846	591 aa	Known RBP	5.42	□□□□□ -1.54
VAR1	Q0140	HIS7	P33734	552 aa	Known RBP	5.41	□□□□□ -1.54
VAR1	Q0140	YKR078W	P36158	585 aa	Known RBP	5.41	□□□□□ -1.54
VAR1	Q0140	YKE2	P52553	114 aa		5.41	□□□□□ -1.54
VAR1	Q0140	TEL2	P53038	688 aa		5.41	□□□□□ -1.54
VAR1	Q0140	NOP8	Q08287	484 aa	Predicted RBP	5.41	□□□□□ -1.54
VAR1	Q0140	MBP1	P39678	833 aa		5.4	□□□□□ -1.54
VAR1	Q0140	FAA4	P47912	694 aa	Known RBP	5.4	□□□□□ -1.54
VAR1	Q0140	DUS3	Q06053	668 aa	Known RBP	5.4	□□□□□ -1.54
VAR1	Q0140	GEP3	Q08622	556 aa		5.4	□□□□□ -1.54
VAR1	Q0140	FMP52	P40008	231 aa		5.39	□□□□□ -1.55
VAR1	Q0140	CDC48	P25694	835 aa	Known RBP	5.38	□□□□□ -1.55
VAR1	Q0140	SBA1	P28707	216 aa	Known RBP	5.38	□□□□□ -1.55
VAR1	Q0140	YBR238C	P38330	731 aa	Known RBP	5.38	□□□□□ -1.55
VAR1	Q0140	PAC2	P39937	518 aa		5.38	□□□□□ -1.55
VAR1	Q0140	GDE1	Q02979	1223 aa		5.38	□□□□□ -1.55
VAR1	Q0140	ERG11	P10614	530 aa		5.37	□□□□□ -1.55
VAR1	Q0140	AGP1	P25376	633 aa		5.37	□□□□□ -1.55
VAR1	Q0140	VHR1	P40522	640 aa		5.37	□□□□□ -1.55
VAR1	Q0140	YIR042C	P40586	236 aa		5.36	□□□□□ -1.55
VAR1	Q0140	VPS30	Q02948	557 aa		5.36	□□□□□ -1.55
VAR1	Q0140	ASM4	Q05166	528 aa		5.36	□□□□□ -1.55

Retrieved 100 of 5,963 RNA–protein pairs in 74.6 ms