RNA–Protein interactions for RNA: ENST00000637789.1

CHD2-229, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-229	ENST00000637789	CENPF	P49454	3210 aa		13.71	□□□□□ -0.22
CHD2-229	ENST00000637789		A0A087WZG4	1122 aa		13.7	□□□□□ -0.22
CHD2-229	ENST00000637789	GPR25	O00155	361 aa		13.7	□□□□□ -0.22
CHD2-229	ENST00000637789	REM2	Q8IYK8	340 aa	Predicted RBP	13.7	□□□□□ -0.22
CHD2-229	ENST00000637789	WASHC2A	Q641Q2	1341 aa		13.69	□□□□□ -0.22
CHD2-229	ENST00000637789	CEP290	O15078	2479 aa		13.69	□□□□□ -0.22
CHD2-229	ENST00000637789	GMPS	P49915	693 aa	Predicted RBP	13.69	□□□□□ -0.22
CHD2-229	ENST00000637789	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.69	□□□□□ -0.22
CHD2-229	ENST00000637789	TRPM4	Q8TD43	1214 aa		13.69	□□□□□ -0.22
CHD2-229	ENST00000637789	L3MBTL2	Q969R5	705 aa		13.69	□□□□□ -0.22
CHD2-229	ENST00000637789	TBC1D2B	Q9UPU7	963 aa		13.69	□□□□□ -0.22
CHD2-229	ENST00000637789	KLRG2	A4D1S0	409 aa	Predicted RBP	13.68	□□□□□ -0.22
CHD2-229	ENST00000637789	KIF20B	Q96Q89	1820 aa		13.67	□□□□□ -0.22
CHD2-229	ENST00000637789	NOM1	Q5C9Z4	860 aa	Known RBP	13.67	□□□□□ -0.22
CHD2-229	ENST00000637789	RASAL3	Q86YV0	1011 aa		13.67	□□□□□ -0.22
CHD2-229	ENST00000637789	NIM1K	Q8IY84	436 aa		13.67	□□□□□ -0.22
CHD2-229	ENST00000637789	MPND	Q8N594	471 aa		13.67	□□□□□ -0.22
CHD2-229	ENST00000637789	FKTN	O75072	461 aa		13.66	□□□□□ -0.22
CHD2-229	ENST00000637789	ALDH1B1	P30837	517 aa		13.66	□□□□□ -0.22
CHD2-229	ENST00000637789	SLC39A6	Q13433	755 aa		13.66	□□□□□ -0.22
CHD2-229	ENST00000637789	NPC1L1	Q9UHC9	1359 aa		13.66	□□□□□ -0.22
CHD2-229	ENST00000637789	CXCL9	Q07325	125 aa		13.65	□□□□□ -0.22
CHD2-229	ENST00000637789	C1orf141	Q5JVX7	400 aa		13.65	□□□□□ -0.22
CHD2-229	ENST00000637789	PRDM6	Q9NQX0	595 aa		13.65	□□□□□ -0.22
CHD2-229	ENST00000637789	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.65	□□□□□ -0.22
CHD2-229	ENST00000637789	KIAA0100	Q14667	2235 aa	Known RBP	13.64	□□□□□ -0.23
CHD2-229	ENST00000637789	EIF4A2	Q14240	407 aa	Known RBP	13.64	□□□□□ -0.23
CHD2-229	ENST00000637789	AMOT	Q4VCS5	1084 aa		13.64	□□□□□ -0.23
CHD2-229	ENST00000637789	KRT26	Q7Z3Y9	468 aa		13.64	□□□□□ -0.23
CHD2-229	ENST00000637789	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.64	□□□□□ -0.23
CHD2-229	ENST00000637789	SHTN1	A0MZ66	631 aa		13.63	□□□□□ -0.23
CHD2-229	ENST00000637789	ADM5	C9JUS6	153 aa		13.63	□□□□□ -0.23
CHD2-229	ENST00000637789	SOX1	O00570	391 aa	Predicted RBP	13.63	□□□□□ -0.23
CHD2-229	ENST00000637789	CAMTA2	O94983	1202 aa		13.63	□□□□□ -0.23
CHD2-229	ENST00000637789	CC2D2B	Q6DHV5	1058 aa		13.63	□□□□□ -0.23
CHD2-229	ENST00000637789	LRCH3	Q96II8	777 aa		13.63	□□□□□ -0.23
CHD2-229	ENST00000637789	PRO3102	Q9H379	93 aa		13.63	□□□□□ -0.23
CHD2-229	ENST00000637789	TRIM17	Q9Y577	477 aa		13.63	□□□□□ -0.23
CHD2-229	ENST00000637789	CDHR2	Q9BYE9	1310 aa		13.63	□□□□□ -0.23
CHD2-229	ENST00000637789	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.62	□□□□□ -0.23
CHD2-229	ENST00000637789	SLC51A	Q86UW1	340 aa		13.62	□□□□□ -0.23
CHD2-229	ENST00000637789	VSIG10	Q8N0Z9	540 aa		13.62	□□□□□ -0.23
CHD2-229	ENST00000637789	BCL2L13	Q9BXK5	485 aa		13.62	□□□□□ -0.23
CHD2-229	ENST00000637789	R3HDML	Q9H3Y0	253 aa		13.62	□□□□□ -0.23
CHD2-229	ENST00000637789	SLC52A2	Q9HAB3	445 aa		13.62	□□□□□ -0.23
CHD2-229	ENST00000637789	VCAN	P13611	3396 aa		13.62	□□□□□ -0.23
CHD2-229	ENST00000637789	PPIP5K2	O43314	1243 aa		13.61	□□□□□ -0.23
CHD2-229	ENST00000637789	STARD3NL	O95772	234 aa		13.61	□□□□□ -0.23
CHD2-229	ENST00000637789	AOC3	Q16853	763 aa		13.61	□□□□□ -0.23
CHD2-229	ENST00000637789	OTOP1	Q7RTM1	612 aa		13.61	□□□□□ -0.23
CHD2-229	ENST00000637789	CNOT7	Q9UIV1	285 aa	Known RBP	13.61	□□□□□ -0.23
CHD2-229	ENST00000637789	LAMA3	Q16787	3333 aa		13.61	□□□□□ -0.23
CHD2-229	ENST00000637789	ARMC5	Q96C12	935 aa		13.6	□□□□□ -0.23
CHD2-229	ENST00000637789	ZNRF3	Q9ULT6	936 aa		13.6	□□□□□ -0.23
CHD2-229	ENST00000637789	MRC1	P22897	1456 aa		13.6	□□□□□ -0.23
CHD2-229	ENST00000637789	TMEM106C	Q9BVX2	250 aa		13.59	□□□□□ -0.23
CHD2-229	ENST00000637789	CARD11	Q9BXL7	1154 aa		13.59	□□□□□ -0.23
CHD2-229	ENST00000637789		H7C1D1	291 aa		13.58	□□□□□ -0.24
CHD2-229	ENST00000637789	COL9A1	P20849	921 aa		13.58	□□□□□ -0.24
CHD2-229	ENST00000637789	IL6ST	P40189	918 aa	Predicted RBP	13.58	□□□□□ -0.24
CHD2-229	ENST00000637789	TM4SF4	P48230	202 aa		13.58	□□□□□ -0.24
CHD2-229	ENST00000637789	GRIPAP1	Q4V328	841 aa		13.58	□□□□□ -0.24
CHD2-229	ENST00000637789	SAMD7	Q7Z3H4	446 aa		13.58	□□□□□ -0.24
CHD2-229	ENST00000637789	MICALL2	Q8IY33	904 aa		13.58	□□□□□ -0.24
CHD2-229	ENST00000637789	TPTE2	Q6XPS3	522 aa		13.57	□□□□□ -0.24
CHD2-229	ENST00000637789	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
CHD2-229	ENST00000637789	DCPS	Q96C86	337 aa	Known RBP	13.57	□□□□□ -0.24
CHD2-229	ENST00000637789	CFHR5	Q9BXR6	569 aa		13.57	□□□□□ -0.24
CHD2-229	ENST00000637789	LGR6	Q9HBX8	967 aa		13.57	□□□□□ -0.24
CHD2-229	ENST00000637789	POLK	Q9UBT6	870 aa		13.57	□□□□□ -0.24
CHD2-229	ENST00000637789	STXBP5L	Q9Y2K9	1186 aa		13.57	□□□□□ -0.24
CHD2-229	ENST00000637789	PTPN22	Q9Y2R2	807 aa		13.57	□□□□□ -0.24
CHD2-229	ENST00000637789	POLR2A	P24928	1970 aa	Known RBP	13.57	□□□□□ -0.24
CHD2-229	ENST00000637789	UBR2	Q8IWV8	1755 aa		13.56	□□□□□ -0.24
CHD2-229	ENST00000637789	RAD17	O75943	681 aa		13.56	□□□□□ -0.24
CHD2-229	ENST00000637789	FAM177B	A6PVY3	158 aa		13.55	□□□□□ -0.24
CHD2-229	ENST00000637789	TCERG1	O14776	1098 aa	Known RBP	13.55	□□□□□ -0.24
CHD2-229	ENST00000637789	EGFR	P00533	1210 aa		13.55	□□□□□ -0.24
CHD2-229	ENST00000637789	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.55	□□□□□ -0.24
CHD2-229	ENST00000637789	DZIP3	Q86Y13	1208 aa	Known RBP	13.55	□□□□□ -0.24
CHD2-229	ENST00000637789	AEBP1	Q8IUX7	1158 aa		13.55	□□□□□ -0.24
CHD2-229	ENST00000637789	CDCA5	Q96FF9	252 aa		13.55	□□□□□ -0.24
CHD2-229	ENST00000637789	ERBB4	Q15303	1308 aa		13.55	□□□□□ -0.24
CHD2-229	ENST00000637789	TNIP1	Q15025	636 aa		13.54	□□□□□ -0.24
CHD2-229	ENST00000637789	CRY2	Q49AN0	593 aa		13.54	□□□□□ -0.24
CHD2-229	ENST00000637789	NPM2	Q86SE8	214 aa	Known RBP	13.54	□□□□□ -0.24
CHD2-229	ENST00000637789	DPF3	Q92784	378 aa		13.54	□□□□□ -0.24
CHD2-229	ENST00000637789	ZNF333	Q96JL9	665 aa		13.54	□□□□□ -0.24
CHD2-229	ENST00000637789	TESK2	Q96S53	571 aa		13.54	□□□□□ -0.24
CHD2-229	ENST00000637789	VPS33B	Q9H267	617 aa		13.54	□□□□□ -0.24
CHD2-229	ENST00000637789		A0A1W2PPC1	479 aa		13.53	□□□□□ -0.24
CHD2-229	ENST00000637789	ANKRD13D	Q6ZTN6	518 aa		13.53	□□□□□ -0.24
CHD2-229	ENST00000637789	DEFB123	Q8N688	67 aa		13.53	□□□□□ -0.24
CHD2-229	ENST00000637789	RAPGEFL1	Q9UHV5	662 aa		13.53	□□□□□ -0.24
CHD2-229	ENST00000637789	A1BG	P04217	495 aa		13.52	□□□□□ -0.25
CHD2-229	ENST00000637789	MKRN3	Q13064	507 aa	Known RBP	13.52	□□□□□ -0.25
CHD2-229	ENST00000637789	CLEC4G	Q6UXB4	293 aa		13.52	□□□□□ -0.25
CHD2-229	ENST00000637789	MOB2	Q70IA6	237 aa		13.52	□□□□□ -0.25
CHD2-229	ENST00000637789		Q7L0L9	218 aa		13.52	□□□□□ -0.25
CHD2-229	ENST00000637789	SULF1	Q8IWU6	871 aa		13.52	□□□□□ -0.25

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