RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 MCCD1P59942 119 aaPredicted RBP14.33□□□□□ -0.11
LINC00538-201ENST00000626109 EIF4A1P60842 406 aaKnown RBP14.33□□□□□ -0.11
LINC00538-201ENST00000626109 FMNL2Q96PY5 1086 aa14.33□□□□□ -0.11
LINC00538-201ENST00000626109 RPS6KL1Q9Y6S9 549 aa14.33□□□□□ -0.12
LINC00538-201ENST00000626109 KCPQ6ZWJ8 1503 aa14.33□□□□□ -0.12
LINC00538-201ENST00000626109 PTCD1O75127 700 aaKnown RBP14.32□□□□□ -0.12
LINC00538-201ENST00000626109 PHF14O94880 888 aa14.32□□□□□ -0.12
LINC00538-201ENST00000626109 EXOSC9Q06265 439 aaKnown RBP14.32□□□□□ -0.12
LINC00538-201ENST00000626109 ZNF496Q96IT1 587 aaPredicted RBP14.32□□□□□ -0.12
LINC00538-201ENST00000626109 RBM42Q9BTD8 480 aaKnown RBP14.32□□□□□ -0.12
LINC00538-201ENST00000626109 UBR2Q8IWV8 1755 aa14.32□□□□□ -0.12
LINC00538-201ENST00000626109 ERCC3P19447 782 aa14.31□□□□□ -0.12
LINC00538-201ENST00000626109 LONRF3Q496Y0 759 aa14.31□□□□□ -0.12
LINC00538-201ENST00000626109 PLCD3Q8N3E9 789 aa14.31□□□□□ -0.12
LINC00538-201ENST00000626109 GPATCH3Q96I76 525 aa14.31□□□□□ -0.12
LINC00538-201ENST00000626109 HEG1Q9ULI3 1381 aa14.31□□□□□ -0.12
LINC00538-201ENST00000626109 SF3B2Q13435 895 aaKnown RBP14.31□□□□□ -0.12
LINC00538-201ENST00000626109 MTA3Q9BTC8 594 aa14.31□□□□□ -0.12
LINC00538-201ENST00000626109 APBA3O96018 575 aa14.3□□□□□ -0.12
LINC00538-201ENST00000626109 RINLQ6ZS11 566 aa14.3□□□□□ -0.12
LINC00538-201ENST00000626109 TNS1Q9HBL0 1735 aaKnown RBP14.3□□□□□ -0.12
LINC00538-201ENST00000626109 SOS1Q07889 1333 aaPredicted RBP14.3□□□□□ -0.12
LINC00538-201ENST00000626109 SNRPA1P09661 255 aaKnown RBP14.29□□□□□ -0.12
LINC00538-201ENST00000626109 KRT24Q2M2I5 525 aa14.29□□□□□ -0.12
LINC00538-201ENST00000626109 TWISTNBQ3B726 338 aaPredicted RBP14.29□□□□□ -0.12
LINC00538-201ENST00000626109 C8orf58Q8NAV2 365 aa14.29□□□□□ -0.12
LINC00538-201ENST00000626109 PNMA2Q9UL42 364 aa14.29□□□□□ -0.12
LINC00538-201ENST00000626109 LOC102724428A0A0B4J2F2 783 aa14.29□□□□□ -0.12
LINC00538-201ENST00000626109 ELL2O00472 640 aaPredicted RBP14.29□□□□□ -0.12
LINC00538-201ENST00000626109 GIGYF1O75420 1035 aaPredicted RBP14.29□□□□□ -0.12
LINC00538-201ENST00000626109 HOXB7P09629 217 aa14.29□□□□□ -0.12
LINC00538-201ENST00000626109 PAX3P23760 479 aa14.29□□□□□ -0.12
LINC00538-201ENST00000626109 SIK1P57059 783 aa14.29□□□□□ -0.12
LINC00538-201ENST00000626109 C8orf34Q49A92 452 aa14.29□□□□□ -0.12
LINC00538-201ENST00000626109 CT47B1P0C2W7 299 aaPredicted RBP14.28□□□□□ -0.12
LINC00538-201ENST00000626109 RGS3P49796 1198 aa14.28□□□□□ -0.12
LINC00538-201ENST00000626109 TSPYL6Q8N831 410 aa14.28□□□□□ -0.12
LINC00538-201ENST00000626109 ATP6V1AP38606 617 aa14.27□□□□□ -0.12
LINC00538-201ENST00000626109 SKAP1Q86WV1 359 aa14.27□□□□□ -0.12
LINC00538-201ENST00000626109 TEX13AQ9BXU3 409 aaPredicted RBP14.27□□□□□ -0.12
LINC00538-201ENST00000626109 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.27□□□□□ -0.12
LINC00538-201ENST00000626109 PLSCR1O15162 318 aa14.27□□□□□ -0.13
LINC00538-201ENST00000626109 CREB3O43889 395 aa14.27□□□□□ -0.13
LINC00538-201ENST00000626109 RARSP54136 660 aaKnown RBP14.27□□□□□ -0.13
LINC00538-201ENST00000626109 KRBA2Q6ZNG9 492 aa14.27□□□□□ -0.13
LINC00538-201ENST00000626109 UBA5Q9GZZ9 404 aa14.27□□□□□ -0.13
LINC00538-201ENST00000626109 CCNL1Q9UK58 526 aaPredicted RBP14.27□□□□□ -0.13
LINC00538-201ENST00000626109 LY75O60449 1722 aa14.26□□□□□ -0.13
LINC00538-201ENST00000626109 BAG6P46379 1132 aa14.26□□□□□ -0.13
LINC00538-201ENST00000626109 ZFYVE27Q5T4F4 411 aa14.26□□□□□ -0.13
LINC00538-201ENST00000626109 RBM46Q8TBY0 533 aaKnown RBP14.26□□□□□ -0.13
LINC00538-201ENST00000626109 VAMP4O75379 141 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 PARNO95453 639 aaKnown RBP14.25□□□□□ -0.13
LINC00538-201ENST00000626109 HDGFL1Q5TGJ6 251 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 DNAJC10Q8IXB1 793 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 SLC4A9Q96Q91 983 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 C5P01031 1676 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 ZNF831Q5JPB2 1677 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 CICQ96RK0 1608 aaPredicted RBP14.25□□□□□ -0.13
LINC00538-201ENST00000626109 LAMB4A4D0S4 1761 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 RGPD3A6NKT7 1758 aaPredicted RBP14.25□□□□□ -0.13
LINC00538-201ENST00000626109 RGPD4Q7Z3J3 1758 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 PRAMEF22A3QJZ6 481 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 STARD3NLO95772 234 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 EIF2S2P20042 333 aaKnown RBP14.25□□□□□ -0.13
LINC00538-201ENST00000626109 SLC27A3Q5K4L6 730 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 FRAT1Q92837 279 aaPredicted RBP14.25□□□□□ -0.13
LINC00538-201ENST00000626109 COG6Q9Y2V7 657 aa14.25□□□□□ -0.13
LINC00538-201ENST00000626109 TJP1Q07157 1748 aa14.24□□□□□ -0.13
LINC00538-201ENST00000626109 HMGB2P26583 209 aaKnown RBP14.24□□□□□ -0.13
LINC00538-201ENST00000626109 MYBPC2Q14324 1141 aa14.24□□□□□ -0.13
LINC00538-201ENST00000626109 TXNRD1Q16881 649 aa14.24□□□□□ -0.13
LINC00538-201ENST00000626109 CCDC30Q5VVM6 783 aa14.24□□□□□ -0.13
LINC00538-201ENST00000626109 TSHZ1Q6ZSZ6 1077 aa14.24□□□□□ -0.13
LINC00538-201ENST00000626109 ILDR2Q71H61 639 aa14.24□□□□□ -0.13
LINC00538-201ENST00000626109 SH3BP5O60239 455 aa14.23□□□□□ -0.13
LINC00538-201ENST00000626109 IGHDP01880 384 aa14.23□□□□□ -0.13
LINC00538-201ENST00000626109 ITPK1Q13572 414 aa14.23□□□□□ -0.13
LINC00538-201ENST00000626109 USP16Q9Y5T5 823 aa14.23□□□□□ -0.13
LINC00538-201ENST00000626109 PANK1Q8TE04 598 aa14.23□□□□□ -0.13
LINC00538-201ENST00000626109 PMM1Q92871 262 aa14.23□□□□□ -0.13
LINC00538-201ENST00000626109 STK31Q9BXU1 1019 aa14.23□□□□□ -0.13
LINC00538-201ENST00000626109 RWDD1Q9H446 243 aaPredicted RBP14.23□□□□□ -0.13
LINC00538-201ENST00000626109 EN1Q05925 392 aaPredicted RBP14.22□□□□□ -0.13
LINC00538-201ENST00000626109 CYP19A1P11511 503 aaPredicted RBP14.21□□□□□ -0.13
LINC00538-201ENST00000626109 KCNQ4P56696 695 aa14.21□□□□□ -0.13
LINC00538-201ENST00000626109 DPH6Q7L8W6 267 aa14.21□□□□□ -0.13
LINC00538-201ENST00000626109 SMC5Q8IY18 1101 aa14.21□□□□□ -0.13
LINC00538-201ENST00000626109 UPF1Q92900 1129 aaKnown RBP eCLIP14.21□□□□□ -0.13
LINC00538-201ENST00000626109 ERBB4Q15303 1308 aa14.21□□□□□ -0.13
LINC00538-201ENST00000626109 ALDH1L2Q3SY69 923 aa14.21□□□□□ -0.14
LINC00538-201ENST00000626109 LINC00116Q8NCU8 138 aa14.21□□□□□ -0.14
LINC00538-201ENST00000626109 CAMKK2Q96RR4 588 aa14.21□□□□□ -0.14
LINC00538-201ENST00000626109 COL5A3P25940 1745 aaPredicted RBP14.2□□□□□ -0.14
LINC00538-201ENST00000626109 EP400Q96L91 3159 aa14.2□□□□□ -0.14
LINC00538-201ENST00000626109 KIF4AO95239 1232 aa14.2□□□□□ -0.14
LINC00538-201ENST00000626109 EZH2Q15910 746 aaKnown RBP14.2□□□□□ -0.14
LINC00538-201ENST00000626109 DEFB132Q7Z7B7 95 aa14.2□□□□□ -0.14
LINC00538-201ENST00000626109 LRRC4BQ9NT99 713 aa14.2□□□□□ -0.14
LINC00538-201ENST00000626109 SMC4Q9NTJ3 1288 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms