RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 JMYQ8N9B5 988 aa15.29■□□□□ 0.04
TCOF1-213ENST00000514442 TSC1Q92574 1164 aa15.29■□□□□ 0.04
TCOF1-213ENST00000514442 TXLNAP40222 546 aa15.29■□□□□ 0.04
TCOF1-213ENST00000514442 TBX22Q9Y458 520 aa15.29■□□□□ 0.04
TCOF1-213ENST00000514442 ZFYVE9O95405 1425 aa15.29■□□□□ 0.04
TCOF1-213ENST00000514442 SLC5A1P13866 664 aa15.29■□□□□ 0.04
TCOF1-213ENST00000514442 NAPBQ9H115 298 aa15.29■□□□□ 0.04
TCOF1-213ENST00000514442 CDKL5O76039 1030 aa15.28■□□□□ 0.04
TCOF1-213ENST00000514442 EVI5LQ96CN4 794 aa15.28■□□□□ 0.04
TCOF1-213ENST00000514442 RASSF4Q9H2L5 321 aa15.28■□□□□ 0.04
TCOF1-213ENST00000514442 LMBRD1Q9NUN5 540 aa15.28■□□□□ 0.04
TCOF1-213ENST00000514442 GUCY1B3Q02153 619 aa15.28■□□□□ 0.04
TCOF1-213ENST00000514442 TTLL5Q6EMB2 1281 aa15.28■□□□□ 0.04
TCOF1-213ENST00000514442 CCDC82Q8N4S0 544 aa15.28■□□□□ 0.04
TCOF1-213ENST00000514442 ORAI2Q96SN7 254 aa15.28■□□□□ 0.04
TCOF1-213ENST00000514442 RUFY1Q96T51 708 aa15.28■□□□□ 0.04
TCOF1-213ENST00000514442 ZNF219Q9P2Y4 722 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-213ENST00000514442 NAP1L1P55209 391 aaKnown RBP15.27■□□□□ 0.04
TCOF1-213ENST00000514442 TEX13AQ9BXU3 409 aaPredicted RBP15.27■□□□□ 0.04
TCOF1-213ENST00000514442 KDM6BO15054 1643 aa15.27■□□□□ 0.04
TCOF1-213ENST00000514442 SDSP20132 328 aa15.27■□□□□ 0.04
TCOF1-213ENST00000514442 USP48Q86UV5 1035 aa15.27■□□□□ 0.04
TCOF1-213ENST00000514442 TRMT1Q9NXH9 659 aaKnown RBP15.27■□□□□ 0.04
TCOF1-213ENST00000514442 TRPM2O94759 1503 aa15.27■□□□□ 0.04
TCOF1-213ENST00000514442 USP5P45974 858 aa15.27■□□□□ 0.03
TCOF1-213ENST00000514442 MAP3K12Q12852 859 aa15.27■□□□□ 0.03
TCOF1-213ENST00000514442 ANKRD44Q8N8A2 993 aa15.27■□□□□ 0.03
TCOF1-213ENST00000514442 SPATA31E1Q6ZUB1 1445 aa15.27■□□□□ 0.03
TCOF1-213ENST00000514442 PPFIA3O75145 1194 aa15.27■□□□□ 0.03
TCOF1-213ENST00000514442 PA2G4Q9UQ80 394 aaKnown RBP15.27■□□□□ 0.03
TCOF1-213ENST00000514442 GCC2Q8IWJ2 1684 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 MAP3K5Q99683 1374 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 SOGA3Q5TF21 947 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 TMX3Q96JJ7 454 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 ADGBQ8N7X0 1667 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 YEATS2Q9ULM3 1422 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 EPS15P42566 896 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 CWF19L2Q2TBE0 894 aaKnown RBP15.26■□□□□ 0.03
TCOF1-213ENST00000514442 DDX46Q7L014 1031 aaKnown RBP15.26■□□□□ 0.03
TCOF1-213ENST00000514442 CCDC186Q7Z3E2 898 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 SKIDA1Q1XH10 827 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 CEP57L1Q8IYX8 460 aa15.26■□□□□ 0.03
TCOF1-213ENST00000514442 IBTKQ9P2D0 1353 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-213ENST00000514442 HAND2P61296 217 aa15.25■□□□□ 0.03
TCOF1-213ENST00000514442 GIMAP6Q6P9H5 292 aa15.25■□□□□ 0.03
TCOF1-213ENST00000514442 DZIP1Q86YF9 867 aaKnown RBP15.25■□□□□ 0.03
TCOF1-213ENST00000514442 KRT18P05783 430 aaKnown RBP15.25■□□□□ 0.03
TCOF1-213ENST00000514442 LMAN1P49257 510 aa15.25■□□□□ 0.03
TCOF1-213ENST00000514442 CCT2P78371 535 aaKnown RBP15.25■□□□□ 0.03
TCOF1-213ENST00000514442 KSR2Q6VAB6 950 aa15.25■□□□□ 0.03
TCOF1-213ENST00000514442 C17orf53Q8N3J3 647 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-213ENST00000514442 PHAXQ9H814 394 aaKnown RBP15.25■□□□□ 0.03
TCOF1-213ENST00000514442 MBD5Q9P267 1494 aa15.25■□□□□ 0.03
TCOF1-213ENST00000514442 GRM8O00222 908 aa15.25■□□□□ 0.03
TCOF1-213ENST00000514442 GIMAP7Q8NHV1 300 aa15.25■□□□□ 0.03
TCOF1-213ENST00000514442 CFAP45Q9UL16 551 aa15.25■□□□□ 0.03
TCOF1-213ENST00000514442 ZNF213O14771 459 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 IL13P35225 146 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 UBAP1LF5GYI3 381 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 SLU7O95391 586 aaKnown RBP15.24■□□□□ 0.03
TCOF1-213ENST00000514442 PDE1AP54750 535 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 CCDC102AQ96A19 550 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 POLR3DP05423 398 aaPredicted RBP15.24■□□□□ 0.03
TCOF1-213ENST00000514442 SNW1Q13573 536 aaKnown RBP15.24■□□□□ 0.03
TCOF1-213ENST00000514442 LMBR1LQ6UX01 489 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 IP6K1Q92551 441 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 RPGRQ92834 1020 aaKnown RBP15.24■□□□□ 0.03
TCOF1-213ENST00000514442 MPHOSPH10O00566 681 aaKnown RBP15.24■□□□□ 0.03
TCOF1-213ENST00000514442 RANBP6O60518 1105 aaKnown RBP15.24■□□□□ 0.03
TCOF1-213ENST00000514442 KIAA0754O94854 1291 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 RAB11FIP4Q86YS3 637 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 ABCA8O94911 1581 aa15.24■□□□□ 0.03
TCOF1-213ENST00000514442 IL2RBP14784 551 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 ATP6V1AP38606 617 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 FAM177A1Q8N128 213 aaPredicted RBP15.23■□□□□ 0.03
TCOF1-213ENST00000514442 C8orf37Q96NL8 207 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 LIMCH1Q9UPQ0 1083 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 MYO5CQ9NQX4 1742 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 SFPQP23246 707 aaKnown RBP eCLIP15.23■□□□□ 0.03
TCOF1-213ENST00000514442 ATP8B2P98198 1209 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 SLC4A8Q2Y0W8 1093 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 ZGPATQ8N5A5 531 aaKnown RBP15.23■□□□□ 0.03
TCOF1-213ENST00000514442 DDX17Q92841 729 aaKnown RBP15.23■□□□□ 0.03
TCOF1-213ENST00000514442 ZHX3Q9H4I2 956 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 SERPINC1P01008 464 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 CCDC191Q8NCU4 936 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 FAM200AQ8TCP9 573 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 URI1O94763 535 aaPredicted RBP15.23■□□□□ 0.03
TCOF1-213ENST00000514442 IVLP07476 585 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 G2E3Q7L622 706 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 FAM107BQ9H098 131 aa15.23■□□□□ 0.03
TCOF1-213ENST00000514442 PTGS1P23219 599 aa15.22■□□□□ 0.03
TCOF1-213ENST00000514442 GSDMDP57764 484 aa15.22■□□□□ 0.03
TCOF1-213ENST00000514442 AXDND1Q5T1B0 1012 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-213ENST00000514442 MKNK2Q9HBH9 465 aa15.22■□□□□ 0.03
TCOF1-213ENST00000514442 USP19O94966 1318 aa15.22■□□□□ 0.03
TCOF1-213ENST00000514442 ARHGEF5Q12774 1597 aa15.22■□□□□ 0.03
TCOF1-213ENST00000514442 EDC4Q6P2E9 1401 aaKnown RBP15.22■□□□□ 0.03
TCOF1-213ENST00000514442 CKAP2LQ8IYA6 745 aa15.22■□□□□ 0.03
TCOF1-213ENST00000514442 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms