RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 DCAF8L2P0C7V8 631 aa23.22■■□□□ 1.31
TCOF1-213ENST00000514442 NISCHQ9Y2I1 1504 aa23.08■■□□□ 1.29
TCOF1-213ENST00000514442 SUPT5HO00267 1087 aaKnown RBP22.05■■□□□ 1.12
TCOF1-213ENST00000514442 SHROOM4Q9ULL8 1493 aa21.97■■□□□ 1.11
TCOF1-213ENST00000514442 PELP1Q8IZL8 1130 aaKnown RBP21.37■■□□□ 1.01
TCOF1-213ENST00000514442 EHMT2Q96KQ7 1210 aa21.25■□□□□ 0.99
TCOF1-213ENST00000514442 MYT1Q01538 1121 aa20.99■□□□□ 0.95
TCOF1-213ENST00000514442 FAM9AQ8IZU1 332 aaPredicted RBP20.76■□□□□ 0.91
TCOF1-213ENST00000514442 PCGF6Q9BYE7 350 aa20.74■□□□□ 0.91
TCOF1-213ENST00000514442 HRCP23327 699 aa20.7■□□□□ 0.9
TCOF1-213ENST00000514442 TTBK1Q5TCY1 1321 aaPredicted RBP20.47■□□□□ 0.87
TCOF1-213ENST00000514442 APLP2Q06481 763 aa20.42■□□□□ 0.86
TCOF1-213ENST00000514442 ZEB1P37275 1124 aaPredicted RBP20.38■□□□□ 0.85
TCOF1-213ENST00000514442 TRIM41Q8WV44 630 aa20.37■□□□□ 0.85
TCOF1-213ENST00000514442 RANGAP1P46060 587 aaPredicted RBP20.33■□□□□ 0.85
TCOF1-213ENST00000514442 CENPBP07199 599 aaPredicted RBP20.28■□□□□ 0.84
TCOF1-213ENST00000514442 PPARGC1BQ86YN6 1023 aaKnown RBP20.15■□□□□ 0.82
TCOF1-213ENST00000514442 UBTFP17480 764 aaKnown RBP20.03■□□□□ 0.8
TCOF1-213ENST00000514442 ATP1B4Q9UN42 357 aaPredicted RBP19.98■□□□□ 0.79
TCOF1-213ENST00000514442 TRIM26Q12899 539 aaPredicted RBP19.9■□□□□ 0.78
TCOF1-213ENST00000514442 ABCC9O60706 1549 aa19.88■□□□□ 0.77
TCOF1-213ENST00000514442 CCER1Q8TC90 406 aaPredicted RBP19.8■□□□□ 0.76
TCOF1-213ENST00000514442 CHIC1Q5VXU3 224 aa19.74■□□□□ 0.75
TCOF1-213ENST00000514442 LOC105371045A0A1W2PR82 267 aa19.72■□□□□ 0.75
TCOF1-213ENST00000514442 PABPN1Q86U42 306 aaKnown RBP eCLIP19.68■□□□□ 0.74
TCOF1-213ENST00000514442 YTHDC1Q96MU7 727 aaKnown RBP19.6■□□□□ 0.73
TCOF1-213ENST00000514442 ERICH6Q7L0X2 663 aa19.49■□□□□ 0.71
TCOF1-213ENST00000514442 GTF3C3Q9Y5Q9 886 aa19.49■□□□□ 0.71
TCOF1-213ENST00000514442 ACIN1Q9UKV3 1341 aaKnown RBP19.43■□□□□ 0.7
TCOF1-213ENST00000514442 SCAF1Q9H7N4 1312 aaKnown RBP19.42■□□□□ 0.7
TCOF1-213ENST00000514442 ITGAEP38570 1179 aa19.39■□□□□ 0.69
TCOF1-213ENST00000514442 DIEXFQ68CQ4 756 aaKnown RBP19.33■□□□□ 0.68
TCOF1-213ENST00000514442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.31■□□□□ 0.68
TCOF1-213ENST00000514442 HNRNPUL2Q1KMD3 747 aaKnown RBP19.31■□□□□ 0.68
TCOF1-213ENST00000514442 NEFLP07196 543 aa19.15■□□□□ 0.66
TCOF1-213ENST00000514442 ZCCHC6Q5VYS8 1495 aaKnown RBP19.14■□□□□ 0.66
TCOF1-213ENST00000514442 SCRIBQ14160 1630 aa19.13■□□□□ 0.65
TCOF1-213ENST00000514442 DCAF1Q9Y4B6 1507 aa19.11■□□□□ 0.65
TCOF1-213ENST00000514442 MYT1LQ9UL68 1186 aa19.08■□□□□ 0.64
TCOF1-213ENST00000514442 NEUROD1Q13562 356 aa19.06■□□□□ 0.64
TCOF1-213ENST00000514442 CCDC180Q9P1Z9 1646 aa18.97■□□□□ 0.63
TCOF1-213ENST00000514442 POLR3GLQ9BT43 218 aa18.95■□□□□ 0.62
TCOF1-213ENST00000514442 FAM50AQ14320 339 aaKnown RBP18.92■□□□□ 0.62
TCOF1-213ENST00000514442 CNGB1Q14028 1251 aaPredicted RBP18.86■□□□□ 0.61
TCOF1-213ENST00000514442 FBLN2P98095 1184 aa18.82■□□□□ 0.6
TCOF1-213ENST00000514442 MYO15BQ96JP2 1530 aa18.81■□□□□ 0.6
TCOF1-213ENST00000514442 ZNF316A6NFI3 1004 aaPredicted RBP18.81■□□□□ 0.6
TCOF1-213ENST00000514442 CSRNP3Q8WYN3 585 aa18.78■□□□□ 0.6
TCOF1-213ENST00000514442 P3H3Q8IVL6 736 aa18.77■□□□□ 0.6
TCOF1-213ENST00000514442 CLSPNQ9HAW4 1339 aa18.74■□□□□ 0.59
TCOF1-213ENST00000514442 TRIM52Q96A61 297 aa18.71■□□□□ 0.59
TCOF1-213ENST00000514442 ARID3CA6NKF2 412 aa18.7■□□□□ 0.58
TCOF1-213ENST00000514442 BCANQ96GW7 911 aa18.61■□□□□ 0.57
TCOF1-213ENST00000514442 ANP32EQ9BTT0 268 aa18.61■□□□□ 0.57
TCOF1-213ENST00000514442 BCL11AQ9H165 835 aa18.57■□□□□ 0.56
TCOF1-213ENST00000514442 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
TCOF1-213ENST00000514442 RTL5Q5HYW3 569 aaPredicted RBP18.53■□□□□ 0.56
TCOF1-213ENST00000514442 SLC4A1APQ9BWU0 796 aaKnown RBP18.52■□□□□ 0.56
TCOF1-213ENST00000514442 ZNF326Q5BKZ1 582 aaKnown RBP18.49■□□□□ 0.55
TCOF1-213ENST00000514442 RSF1Q96T23 1441 aaPredicted RBP18.47■□□□□ 0.55
TCOF1-213ENST00000514442 CDK11AQ9UQ88 783 aaPredicted RBP18.41■□□□□ 0.54
TCOF1-213ENST00000514442 ZNF777Q9ULD5 760 aaPredicted RBP18.41■□□□□ 0.54
TCOF1-213ENST00000514442 NACADO15069 1562 aa18.39■□□□□ 0.53
TCOF1-213ENST00000514442 MIER1Q8N108 512 aa18.36■□□□□ 0.53
TCOF1-213ENST00000514442 FKBP8Q14318 412 aa18.29■□□□□ 0.52
TCOF1-213ENST00000514442 DAXXQ9UER7 740 aaPredicted RBP18.23■□□□□ 0.51
TCOF1-213ENST00000514442 CECR2Q9BXF3 1484 aa18.23■□□□□ 0.51
TCOF1-213ENST00000514442 ANP32CO43423 234 aa18.22■□□□□ 0.51
TCOF1-213ENST00000514442 BAZ1BQ9UIG0 1483 aaKnown RBP18.21■□□□□ 0.51
TCOF1-213ENST00000514442 SUPT16HQ9Y5B9 1047 aaKnown RBP18.16■□□□□ 0.5
TCOF1-213ENST00000514442 CHIC2Q9UKJ5 165 aa18.16■□□□□ 0.5
TCOF1-213ENST00000514442 CLIP1P30622 1438 aa18.16■□□□□ 0.5
TCOF1-213ENST00000514442 WRNQ14191 1432 aaPredicted RBP eCLIP18.14■□□□□ 0.49
TCOF1-213ENST00000514442 CHMP7Q8WUX9 453 aaPredicted RBP18.09■□□□□ 0.49
TCOF1-213ENST00000514442 BAZ1AQ9NRL2 1556 aaPredicted RBP18.09■□□□□ 0.49
TCOF1-213ENST00000514442 CEP162Q5TB80 1403 aa18.07■□□□□ 0.48
TCOF1-213ENST00000514442 GOLGA3Q08378 1498 aa18.05■□□□□ 0.48
TCOF1-213ENST00000514442 TONSLQ96HA7 1378 aa18.04■□□□□ 0.48
TCOF1-213ENST00000514442 ANP32AP39687 249 aaKnown RBP18.04■□□□□ 0.48
TCOF1-213ENST00000514442 MTUS2Q5JR59 1369 aa18.04■□□□□ 0.48
TCOF1-213ENST00000514442 EIF5BO60841 1220 aaKnown RBP18.02■□□□□ 0.47
TCOF1-213ENST00000514442 EEA1Q15075 1411 aa18■□□□□ 0.47
TCOF1-213ENST00000514442 TSHZ2Q9NRE2 1034 aa17.99■□□□□ 0.47
TCOF1-213ENST00000514442 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.98■□□□□ 0.474e-8■■■■□ 22.5
TCOF1-213ENST00000514442 CHGAP10645 457 aaKnown RBP17.97■□□□□ 0.47
TCOF1-213ENST00000514442 NBR1Q14596 966 aa17.97■□□□□ 0.47
TCOF1-213ENST00000514442 MROH2BQ7Z745 1585 aa17.97■□□□□ 0.47
TCOF1-213ENST00000514442 NPM1P06748 294 aaKnown RBP eCLIP17.97■□□□□ 0.47
TCOF1-213ENST00000514442 KIF27Q86VH2 1401 aa17.94■□□□□ 0.46
TCOF1-213ENST00000514442 DDX10Q13206 875 aaKnown RBP17.93■□□□□ 0.46
TCOF1-213ENST00000514442 PLPPR3Q6T4P5 718 aa17.92■□□□□ 0.46
TCOF1-213ENST00000514442 RRP7BPQ9NSQ0 103 aa17.9■□□□□ 0.46
TCOF1-213ENST00000514442 TNIKQ9UKE5 1360 aa17.89■□□□□ 0.45
TCOF1-213ENST00000514442 CEP164Q9UPV0 1460 aa17.88■□□□□ 0.45
TCOF1-213ENST00000514442 SOGA1O94964 1423 aa17.88■□□□□ 0.45
TCOF1-213ENST00000514442 TSPY4P0CV99 314 aa17.87■□□□□ 0.45
TCOF1-213ENST00000514442 TSPY10P0CW01 314 aa17.87■□□□□ 0.45
TCOF1-213ENST00000514442 GLIPR1L2Q4G1C9 344 aa17.87■□□□□ 0.45
TCOF1-213ENST00000514442 HIRIP3Q9BW71 556 aaPredicted RBP17.86■□□□□ 0.45
TCOF1-213ENST00000514442 RBM19Q9Y4C8 960 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms