RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 MYD88Q99836 296 aa19.65■□□□□ 0.74
SQSTM1-213ENST00000510187 DZIP3Q86Y13 1208 aaKnown RBP19.65■□□□□ 0.74
SQSTM1-213ENST00000510187 FAM43AQ8N2R8 423 aa19.65■□□□□ 0.74
SQSTM1-213ENST00000510187 MAP3K15Q6ZN16 1313 aa19.64■□□□□ 0.74
SQSTM1-213ENST00000510187 CWF19L2Q2TBE0 894 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-213ENST00000510187 PROM2Q8N271 834 aa19.64■□□□□ 0.73
SQSTM1-213ENST00000510187 TBC1D2BQ9UPU7 963 aa19.64■□□□□ 0.73
SQSTM1-213ENST00000510187 GNPATO15228 680 aa19.63■□□□□ 0.73
SQSTM1-213ENST00000510187 ALDH1L1O75891 902 aa19.63■□□□□ 0.73
SQSTM1-213ENST00000510187 TNPO1Q92973 898 aaKnown RBP19.63■□□□□ 0.73
SQSTM1-213ENST00000510187 OSBPL3Q9H4L5 887 aa19.63■□□□□ 0.73
SQSTM1-213ENST00000510187 COL15A1P39059 1388 aa19.63■□□□□ 0.73
SQSTM1-213ENST00000510187 TNS1Q9HBL0 1735 aaKnown RBP19.63■□□□□ 0.73
SQSTM1-213ENST00000510187 RPS6KA4O75676 772 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 IGKV5-2P06315 115 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 AK7Q96M32 723 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 RTN4Q9NQC3 1192 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 ARFGEF2Q9Y6D5 1785 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 TAF1LQ8IZX4 1826 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 NEURL1BA8MQ27 555 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 ATP5J2-PTCD1G3V325 749 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 HSP90AA1P07900 732 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 HMGB2P26583 209 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 SKOR2Q2VWA4 1001 aaPredicted RBP19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 CLEC17AQ6ZS10 378 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 USP26Q9BXU7 913 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 USP44Q9H0E7 712 aa19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 RTCBQ9Y3I0 505 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-213ENST00000510187 C4BP0C0L5 1744 aa19.61■□□□□ 0.73
SQSTM1-213ENST00000510187 CD2BP2O95400 341 aaKnown RBP19.61■□□□□ 0.73
SQSTM1-213ENST00000510187 GNAI3P08754 354 aa19.61■□□□□ 0.73
SQSTM1-213ENST00000510187 A0A087WZG4 1122 aa19.6■□□□□ 0.73
SQSTM1-213ENST00000510187 ERVV-1B6SEH8 477 aa19.6■□□□□ 0.73
SQSTM1-213ENST00000510187 NUP188Q5SRE5 1749 aa19.6■□□□□ 0.73
SQSTM1-213ENST00000510187 C9orf78Q9NZ63 289 aaPredicted RBP19.6■□□□□ 0.73
SQSTM1-213ENST00000510187 GNAI2P04899 355 aa19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 SDSP20132 328 aa19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 SF3B2Q13435 895 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 TCIRG1Q13488 830 aa19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 HLFQ16534 295 aa19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 GIGYF2Q6Y7W6 1299 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 C16orf71Q8IYS4 520 aaPredicted RBP19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 REC8O95072 547 aa19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 UBTFL1P0CB47 393 aaPredicted RBP19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 GCKRQ14397 625 aa19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 SMIM5Q71RC9 77 aa19.59■□□□□ 0.73
SQSTM1-213ENST00000510187 NBPF7P0C2Y1 421 aaPredicted RBP19.58■□□□□ 0.72
SQSTM1-213ENST00000510187 MRE11P49959 708 aa19.58■□□□□ 0.72
SQSTM1-213ENST00000510187 HSP90AB3PQ58FF7 597 aa19.58■□□□□ 0.72
SQSTM1-213ENST00000510187 GRM8O00222 908 aa19.57■□□□□ 0.72
SQSTM1-213ENST00000510187 CAMTA2O94983 1202 aa19.57■□□□□ 0.72
SQSTM1-213ENST00000510187 EN1Q05925 392 aaPredicted RBP19.57■□□□□ 0.72
SQSTM1-213ENST00000510187 AMIGO3Q86WK7 504 aa19.57■□□□□ 0.72
SQSTM1-213ENST00000510187 OTUD7AQ8TE49 926 aaPredicted RBP19.57■□□□□ 0.72
SQSTM1-213ENST00000510187 PHF14O94880 888 aa19.56■□□□□ 0.72
SQSTM1-213ENST00000510187 ISCA1Q9BUE6 129 aa19.56■□□□□ 0.72
SQSTM1-213ENST00000510187 CWC25Q9NXE8 425 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-213ENST00000510187 IBTKQ9P2D0 1353 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-213ENST00000510187 SMARCA5O60264 1052 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-213ENST00000510187 XRCC6P12956 609 aaKnown RBP eCLIP19.56■□□□□ 0.721e-5■■■□□ 14.9
SQSTM1-213ENST00000510187 TRAPPC3LQ5T215 181 aa19.56■□□□□ 0.72
SQSTM1-213ENST00000510187 CCDC191Q8NCU4 936 aa19.56■□□□□ 0.72
SQSTM1-213ENST00000510187 BAG6P46379 1132 aa19.55■□□□□ 0.72
SQSTM1-213ENST00000510187 EZH2Q15910 746 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-213ENST00000510187 ARHGEF1Q92888 912 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-213ENST00000510187 CAMKK2Q96RR4 588 aa19.55■□□□□ 0.72
SQSTM1-213ENST00000510187 LRRFIP2Q9Y608 721 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-213ENST00000510187 RGPD3A6NKT7 1758 aaPredicted RBP19.55■□□□□ 0.72
SQSTM1-213ENST00000510187 RGPD4Q7Z3J3 1758 aa19.55■□□□□ 0.72
SQSTM1-213ENST00000510187 ERC2O15083 957 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 GPTP24298 496 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 PDE1AP54750 535 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 TRIM28Q13263 835 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 NARFQ9UHQ1 456 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 ZNF652Q9Y2D9 606 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 UTYO14607 1347 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 SALL3Q9BXA9 1300 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 GOLGA6L22H0YM25 854 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 ZPR1O75312 459 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 ADRA2BP18089 450 aa19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 GZF1Q9H116 711 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-213ENST00000510187 AFDNP55196 1824 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-213ENST00000510187 ST18O60284 1047 aa19.53■□□□□ 0.72
SQSTM1-213ENST00000510187 RFC4P35249 363 aa19.53■□□□□ 0.72
SQSTM1-213ENST00000510187 NUCB2P80303 420 aa19.53■□□□□ 0.72
SQSTM1-213ENST00000510187 CWC22Q9HCG8 908 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-213ENST00000510187 HDAC5Q9UQL6 1122 aa19.53■□□□□ 0.72
SQSTM1-213ENST00000510187 TUBGCP6Q96RT7 1819 aa19.52■□□□□ 0.72
SQSTM1-213ENST00000510187 SSFA2P28290 1259 aa19.52■□□□□ 0.72
SQSTM1-213ENST00000510187 ATP8B2P98198 1209 aa19.52■□□□□ 0.72
SQSTM1-213ENST00000510187 USPL1Q5W0Q7 1092 aa19.52■□□□□ 0.72
SQSTM1-213ENST00000510187 CLEC4GQ6UXB4 293 aa19.52■□□□□ 0.72
SQSTM1-213ENST00000510187 UBE3BQ7Z3V4 1068 aa19.52■□□□□ 0.72
SQSTM1-213ENST00000510187 ZNF34Q8IZ26 560 aa19.52■□□□□ 0.72
SQSTM1-213ENST00000510187 JARID2Q92833 1246 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-213ENST00000510187 SRP68Q9UHB9 627 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-213ENST00000510187 ZNF827Q17R98 1081 aa19.51■□□□□ 0.71
SQSTM1-213ENST00000510187 DEFB132Q7Z7B7 95 aa19.51■□□□□ 0.71
SQSTM1-213ENST00000510187 NLRP10Q86W26 655 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms