RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 EPB41L2O43491 1005 aaKnown RBP16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 DDX58O95786 925 aaKnown RBP16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 HS1BP3Q53T59 392 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 KRT28Q7Z3Y7 464 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 ZNF589Q86UQ0 364 aaPredicted RBP16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 ERC1Q8IUD2 1116 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 DDX21Q9NR30 783 aaKnown RBP eCLIP16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 ATP5J2-PTCD1G3V325 749 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 PTCD1O75127 700 aaKnown RBP16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 PHF14O94880 888 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 VPS53Q5VIR6 699 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 ZNF790Q6PG37 636 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 CABLES1Q8TDN4 633 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 CCDC39Q9UFE4 941 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 LTN1O94822 1766 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 CCDC183Q5T5S1 534 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 USP16Q9Y5T5 823 aa16.22■□□□□ 0.19
HERPUD1-204ENST00000439977 RGPD2P0DJD1 1756 aa16.21■□□□□ 0.19
HERPUD1-204ENST00000439977 UBE2HP62256 183 aa16.21■□□□□ 0.19
HERPUD1-204ENST00000439977 SLC27A2O14975 620 aa16.21■□□□□ 0.18
HERPUD1-204ENST00000439977 LARP1BQ659C4 914 aaKnown RBP16.21■□□□□ 0.18
HERPUD1-204ENST00000439977 ZNF496Q96IT1 587 aaPredicted RBP16.21■□□□□ 0.18
HERPUD1-204ENST00000439977 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.21■□□□□ 0.182e-7■□□□□ 10.4
HERPUD1-204ENST00000439977 C17orf53Q8N3J3 647 aaPredicted RBP16.2■□□□□ 0.18
HERPUD1-204ENST00000439977 RAPGEF4Q8WZA2 1011 aa16.2■□□□□ 0.18
HERPUD1-204ENST00000439977 ZNF500O60304 480 aaPredicted RBP16.2■□□□□ 0.18
HERPUD1-204ENST00000439977 MAP4K1Q92918 833 aa16.2■□□□□ 0.18
HERPUD1-204ENST00000439977 TCHHQ07283 1943 aa16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 NEXNQ0ZGT2 675 aa16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 CAMK4Q16566 473 aa16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 CDC37L1Q7L3B6 337 aa16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 ARID3AQ99856 593 aa16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 TTC12Q9H892 705 aaPredicted RBP16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 NEURL1BA8MQ27 555 aa16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 ADCY5O95622 1261 aa16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 CSB-PGBD3P0DP91 1061 aa16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 CHRNA2Q15822 529 aa16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 SEC62Q99442 399 aaKnown RBP16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 DNAJC2Q99543 621 aaKnown RBP16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 TFIP11Q9UBB9 837 aaKnown RBP16.19■□□□□ 0.18
HERPUD1-204ENST00000439977 GCKRQ14397 625 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 SLFNL1Q499Z3 407 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 CCDC129Q6ZRS4 1044 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 UBE3BQ7Z3V4 1068 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 FAM13BQ9NYF5 915 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 CACNA1FO60840 1977 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 PPFIA3O75145 1194 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 TPM2P07951 284 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 TMEM87AQ8NBN3 555 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 ATP6V1DQ9Y5K8 247 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 MED1Q15648 1581 aaPredicted RBP16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 LARP1Q6PKG0 1096 aaKnown RBP16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 BLOC1S2Q6QNY1 142 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 UBE2Q2Q8WVN8 375 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 FER1L4A9Z1Z3 1794 aa16.18■□□□□ 0.18
HERPUD1-204ENST00000439977 TFCP2Q12800 502 aa16.17■□□□□ 0.18
HERPUD1-204ENST00000439977 PROSER2Q86WR7 435 aaPredicted RBP16.17■□□□□ 0.18
HERPUD1-204ENST00000439977 ERBB3P21860 1342 aa16.17■□□□□ 0.18
HERPUD1-204ENST00000439977 HEG1Q9ULI3 1381 aa16.17■□□□□ 0.18
HERPUD1-204ENST00000439977 DNTTIP2Q5QJE6 756 aaKnown RBP16.17■□□□□ 0.18
HERPUD1-204ENST00000439977 ANKRD13DQ6ZTN6 518 aa16.17■□□□□ 0.18
HERPUD1-204ENST00000439977 LRRC2Q9BYS8 371 aa16.17■□□□□ 0.18
HERPUD1-204ENST00000439977 SLC52A2Q9HAB3 445 aa16.17■□□□□ 0.18
HERPUD1-204ENST00000439977 SH2B1Q9NRF2 756 aaPredicted RBP16.17■□□□□ 0.18
HERPUD1-204ENST00000439977 ZSCAN31Q96LW9 406 aaPredicted RBP16.16■□□□□ 0.18
HERPUD1-204ENST00000439977 TM6SF1Q9BZW5 370 aa16.16■□□□□ 0.18
HERPUD1-204ENST00000439977 HDAC5Q9UQL6 1122 aa16.16■□□□□ 0.18
HERPUD1-204ENST00000439977 DBNLQ9UJU6 430 aaKnown RBP16.16■□□□□ 0.18
HERPUD1-204ENST00000439977 ADGRL3Q9HAR2 1447 aa16.16■□□□□ 0.18
HERPUD1-204ENST00000439977 UQCRHLA0A096LP55 91 aa16.15■□□□□ 0.18
HERPUD1-204ENST00000439977 RRP9O43818 475 aaKnown RBP16.15■□□□□ 0.18
HERPUD1-204ENST00000439977 UQCRHP07919 91 aa16.15■□□□□ 0.18
HERPUD1-204ENST00000439977 FOSBP53539 338 aa16.15■□□□□ 0.18
HERPUD1-204ENST00000439977 TTC6Q86TZ1 520 aa16.15■□□□□ 0.18
HERPUD1-204ENST00000439977 DDX11Q96FC9 970 aa16.15■□□□□ 0.18
HERPUD1-204ENST00000439977 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.15■□□□□ 0.18
HERPUD1-204ENST00000439977 DDX46Q7L014 1031 aaKnown RBP16.15■□□□□ 0.18
HERPUD1-204ENST00000439977 NPHP3Q7Z494 1330 aa16.15■□□□□ 0.18
HERPUD1-204ENST00000439977 AP5Z1O43299 807 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 JAK2O60674 1132 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 LIG1P18858 919 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 PSMA5P28066 241 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 TOB2Q14106 344 aaPredicted RBP16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 SPC24Q8NBT2 197 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 KCNB2Q92953 911 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 DBNDD2Q9BQY9 259 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 METTL22Q9BUU2 404 aaPredicted RBP16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 PHKG2P15735 406 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 CKAP2LQ8IYA6 745 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 TTC5Q8N0Z6 440 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 UTYO14607 1347 aa16.14■□□□□ 0.17
HERPUD1-204ENST00000439977 A0A087WZG4 1122 aa16.13■□□□□ 0.17
HERPUD1-204ENST00000439977 TAF5LO75529 589 aa16.13■□□□□ 0.17
HERPUD1-204ENST00000439977 RNF20Q5VTR2 975 aa16.13■□□□□ 0.17
HERPUD1-204ENST00000439977 KDM3BQ7LBC6 1761 aa16.13■□□□□ 0.17
HERPUD1-204ENST00000439977 HIP1O00291 1037 aa16.13■□□□□ 0.17
HERPUD1-204ENST00000439977 TATP17735 454 aaPredicted RBP16.13■□□□□ 0.17
HERPUD1-204ENST00000439977 RPS6KB1P23443 525 aa16.13■□□□□ 0.17
HERPUD1-204ENST00000439977 PTPN12Q05209 780 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms