RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 ANKFY1Q9P2R3 1169 aa13.8□□□□□ -0.2
PCF11-201ENST00000298281 TOP1P11387 765 aaKnown RBP13.8□□□□□ -0.2
PCF11-201ENST00000298281 IFIT5Q13325 482 aaKnown RBP13.8□□□□□ -0.2
PCF11-201ENST00000298281 MAATS1Q7Z4T9 603 aa13.8□□□□□ -0.2
PCF11-201ENST00000298281 TMOD3Q9NYL9 352 aa13.8□□□□□ -0.2
PCF11-201ENST00000298281 BAG4O95429 457 aaKnown RBP13.8□□□□□ -0.2
PCF11-201ENST00000298281 SLC5A1P13866 664 aa13.8□□□□□ -0.2
PCF11-201ENST00000298281 EP400NLQ6ZTU2 488 aa13.8□□□□□ -0.2
PCF11-201ENST00000298281 ZSCAN30Q86W11 494 aa13.8□□□□□ -0.2
PCF11-201ENST00000298281 HECW1Q76N89 1606 aa13.8□□□□□ -0.2
PCF11-201ENST00000298281 PHACTR2O75167 634 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 CAVIN2O95810 425 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 NBPF1Q3BBV0 1214 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 POTEB2H3BUK9 544 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 FAM212AQ96EL1 285 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 CCDC85AQ96PX6 553 aaPredicted RBP13.79□□□□□ -0.2
PCF11-201ENST00000298281 STX6O43752 255 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 KIF4BQ2VIQ3 1234 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 CTR9Q6PD62 1173 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 WHAMMQ8TF30 809 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 PRG4Q92954 1404 aaPredicted RBP13.79□□□□□ -0.2
PCF11-201ENST00000298281 DDX12PQ92771 950 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 RPGRQ92834 1020 aaKnown RBP13.79□□□□□ -0.2
PCF11-201ENST00000298281 SUPT6HQ7KZ85 1726 aaKnown RBP13.79□□□□□ -0.2
PCF11-201ENST00000298281 GSDMDP57764 484 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 SEPT14Q6ZU15 432 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 SLC12A7Q9Y666 1083 aa13.79□□□□□ -0.2
PCF11-201ENST00000298281 CCDC194A0A1B0GVG4 234 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 YEATS4O95619 227 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 NAA25Q14CX7 972 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 TAF7Q15545 349 aaPredicted RBP13.78□□□□□ -0.2
PCF11-201ENST00000298281 SARNPP82979 210 aaKnown RBP13.78□□□□□ -0.2
PCF11-201ENST00000298281 DUSP27Q5VZP5 1158 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 LRRC27Q9C0I9 530 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 ZNF213O14771 459 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 ZBTB24O43167 697 aaPredicted RBP13.78□□□□□ -0.2
PCF11-201ENST00000298281 KIF5BP33176 963 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 CATIPQ7Z7H3 387 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 DACT3Q96B18 629 aaPredicted RBP13.78□□□□□ -0.2
PCF11-201ENST00000298281 GABPAQ06546 454 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 PLS1Q14651 629 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 KANK3Q6NY19 840 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 GSTA5Q7RTV2 222 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 POLR3GO15318 223 aaPredicted RBP13.78□□□□□ -0.2
PCF11-201ENST00000298281 FAM114A1Q8IWE2 563 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 HYPKQ9NX55 129 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 RRP9O43818 475 aaKnown RBP13.78□□□□□ -0.2
PCF11-201ENST00000298281 CCDC155Q8N6L0 562 aa13.78□□□□□ -0.2
PCF11-201ENST00000298281 MIPOL1Q8TD10 442 aa13.77□□□□□ -0.2
PCF11-201ENST00000298281 TROQ12816 1431 aaPredicted RBP13.77□□□□□ -0.2
PCF11-201ENST00000298281 CFTRP13569 1480 aa13.77□□□□□ -0.2
PCF11-201ENST00000298281 TTF1Q15361 905 aaPredicted RBP13.77□□□□□ -0.2
PCF11-201ENST00000298281 TBC1D5Q92609 795 aa13.77□□□□□ -0.2
PCF11-201ENST00000298281 LDHCP07864 332 aa13.77□□□□□ -0.21
PCF11-201ENST00000298281 TRAF1Q13077 416 aa13.77□□□□□ -0.21
PCF11-201ENST00000298281 TCP11L1Q9NUJ3 509 aa13.77□□□□□ -0.21
PCF11-201ENST00000298281 PPME1Q9Y570 386 aa13.77□□□□□ -0.21
PCF11-201ENST00000298281 AQRO60306 1485 aaKnown RBP eCLIP13.77□□□□□ -0.212e-6■■■■■ 30.4
PCF11-201ENST00000298281 SMC6Q96SB8 1091 aa13.77□□□□□ -0.21
PCF11-201ENST00000298281 CEP120Q8N960 986 aa13.77□□□□□ -0.21
PCF11-201ENST00000298281 DDX19AQ9NUU7 478 aaKnown RBP13.77□□□□□ -0.21
PCF11-201ENST00000298281 SSRP1Q08945 709 aaKnown RBP13.77□□□□□ -0.21
PCF11-201ENST00000298281 GBP7Q8N8V2 638 aaPredicted RBP13.77□□□□□ -0.21
PCF11-201ENST00000298281 CALML4Q96GE6 196 aa13.77□□□□□ -0.21
PCF11-201ENST00000298281 NUDT16Q96DE0 195 aaKnown RBP13.76□□□□□ -0.21
PCF11-201ENST00000298281 TRERF1Q96PN7 1200 aa13.76□□□□□ -0.21
PCF11-201ENST00000298281 TEX13AQ9BXU3 409 aaPredicted RBP13.76□□□□□ -0.21
PCF11-201ENST00000298281 TMEM57Q8N5G2 664 aa13.76□□□□□ -0.21
PCF11-201ENST00000298281 EXOC6BQ9Y2D4 811 aa13.76□□□□□ -0.21
PCF11-201ENST00000298281 KIF4AO95239 1232 aa13.76□□□□□ -0.21
PCF11-201ENST00000298281 CFAP157Q5JU67 520 aa13.76□□□□□ -0.21
PCF11-201ENST00000298281 CCDC141Q6ZP82 1450 aa13.76□□□□□ -0.21
PCF11-201ENST00000298281 RRS1Q15050 365 aaKnown RBP13.76□□□□□ -0.21
PCF11-201ENST00000298281 TTC12Q9H892 705 aaPredicted RBP13.76□□□□□ -0.21
PCF11-201ENST00000298281 AKNAQ7Z591 1439 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 CCDC172P0C7W6 258 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 SLFN5Q08AF3 891 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 CNNM3Q8NE01 707 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 LIMCH1Q9UPQ0 1083 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 NSD3Q9BZ95 1437 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 MYO1BO43795 1136 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 KIAA0753Q2KHM9 967 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 PPP4R3BQ5MIZ7 849 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 CCDC65Q8IXS2 484 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 PLVAPQ9BX97 442 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 TACC3Q9Y6A5 838 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 SYCE3A1L190 88 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 ZFP91Q96JP5 570 aaPredicted RBP13.75□□□□□ -0.21
PCF11-201ENST00000298281 IFI16Q16666 785 aaKnown RBP13.75□□□□□ -0.21
PCF11-201ENST00000298281 CEP112Q8N8E3 955 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 DHX29Q7Z478 1369 aaKnown RBP13.75□□□□□ -0.21
PCF11-201ENST00000298281 MTIF2P46199 727 aaKnown RBP13.75□□□□□ -0.21
PCF11-201ENST00000298281 SLC4A8Q2Y0W8 1093 aa13.75□□□□□ -0.21
PCF11-201ENST00000298281 PTPRCP08575 1304 aa13.74□□□□□ -0.21
PCF11-201ENST00000298281 VAT1LQ9HCJ6 419 aa13.74□□□□□ -0.21
PCF11-201ENST00000298281 RANBP6O60518 1105 aaKnown RBP13.74□□□□□ -0.21
PCF11-201ENST00000298281 ATXN8OSP0DMR3 200 aa13.74□□□□□ -0.21
PCF11-201ENST00000298281 BRPF3Q9ULD4 1205 aa13.74□□□□□ -0.21
PCF11-201ENST00000298281 PPP2R5CQ13362 524 aa13.74□□□□□ -0.21
PCF11-201ENST00000298281 BAG3O95817 575 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms