RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SPC24Q8NBT2 197 aa25.53■■□□□ 1.68
TRIM28-201ENST00000253024 RUFY2Q8WXA3 655 aa25.53■■□□□ 1.68
TRIM28-201ENST00000253024 RAPGEF4Q8WZA2 1011 aa25.53■■□□□ 1.68
TRIM28-201ENST00000253024 PDLIM2Q96JY6 352 aa25.53■■□□□ 1.68
TRIM28-201ENST00000253024 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.53■■□□□ 1.68
TRIM28-201ENST00000253024 FAM177BA6PVY3 158 aa25.52■■□□□ 1.68
TRIM28-201ENST00000253024 ZKSCAN1P17029 563 aaPredicted RBP25.52■■□□□ 1.68
TRIM28-201ENST00000253024 TSC1Q92574 1164 aa25.52■■□□□ 1.68
TRIM28-201ENST00000253024 NOL7Q9UMY1 257 aaKnown RBP25.52■■□□□ 1.68
TRIM28-201ENST00000253024 CDC37L1Q7L3B6 337 aa25.52■■□□□ 1.68
TRIM28-201ENST00000253024 AOX1Q06278 1338 aa25.52■■□□□ 1.68
TRIM28-201ENST00000253024 CCDC171Q6TFL3 1326 aa25.52■■□□□ 1.68
TRIM28-201ENST00000253024 PROSER2Q86WR7 435 aaPredicted RBP25.51■■□□□ 1.67
TRIM28-201ENST00000253024 UBE2Q2Q8WVN8 375 aa25.51■■□□□ 1.67
TRIM28-201ENST00000253024 ARHGAP23Q9P227 1491 aa25.51■■□□□ 1.67
TRIM28-201ENST00000253024 LARP1BQ659C4 914 aaKnown RBP25.51■■□□□ 1.67
TRIM28-201ENST00000253024 CCDC85AQ96PX6 553 aaPredicted RBP25.51■■□□□ 1.67
TRIM28-201ENST00000253024 DDX46Q7L014 1031 aaKnown RBP25.5■■□□□ 1.67
TRIM28-201ENST00000253024 BCL11BQ9C0K0 894 aaPredicted RBP25.5■■□□□ 1.67
TRIM28-201ENST00000253024 ZKSCAN5Q9Y2L8 839 aa25.5■■□□□ 1.67
TRIM28-201ENST00000253024 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.5■■□□□ 1.673e-12■□□□□ 10.7
TRIM28-201ENST00000253024 ZNF790Q6PG37 636 aa25.5■■□□□ 1.67
TRIM28-201ENST00000253024 LINS1Q8NG48 757 aa25.5■■□□□ 1.67
TRIM28-201ENST00000253024 BABAM1Q9NWV8 329 aa25.5■■□□□ 1.67
TRIM28-201ENST00000253024 MTMR6Q9Y217 621 aa25.5■■□□□ 1.67
TRIM28-201ENST00000253024 PDIA6Q15084 440 aa25.49■■□□□ 1.67
TRIM28-201ENST00000253024 AMOTQ4VCS5 1084 aa25.49■■□□□ 1.67
TRIM28-201ENST00000253024 CKAP2LQ8IYA6 745 aa25.49■■□□□ 1.67
TRIM28-201ENST00000253024 EVI5LQ96CN4 794 aa25.49■■□□□ 1.67
TRIM28-201ENST00000253024 OFD1O75665 1012 aa25.49■■□□□ 1.67
TRIM28-201ENST00000253024 TTC41PQ6P2S7 1318 aa25.49■■□□□ 1.67
TRIM28-201ENST00000253024 LTN1O94822 1766 aa25.48■■□□□ 1.67
TRIM28-201ENST00000253024 SLIT1O75093 1534 aa25.48■■□□□ 1.67
TRIM28-201ENST00000253024 SLC27A2O14975 620 aa25.48■■□□□ 1.67
TRIM28-201ENST00000253024 ADCY5O95622 1261 aa25.48■■□□□ 1.67
TRIM28-201ENST00000253024 DDX58O95786 925 aaKnown RBP25.48■■□□□ 1.67
TRIM28-201ENST00000253024 TFCP2Q12800 502 aa25.48■■□□□ 1.67
TRIM28-201ENST00000253024 ANKARQ7Z5J8 1434 aa25.48■■□□□ 1.67
TRIM28-201ENST00000253024 NEXNQ0ZGT2 675 aa25.47■■□□□ 1.67
TRIM28-201ENST00000253024 NEUROD6Q96NK8 337 aa25.47■■□□□ 1.67
TRIM28-201ENST00000253024 JAK2O60674 1132 aa25.47■■□□□ 1.67
TRIM28-201ENST00000253024 NECTIN1Q15223 517 aa25.47■■□□□ 1.67
TRIM28-201ENST00000253024 DDX21Q9NR30 783 aaKnown RBP eCLIP25.47■■□□□ 1.67
TRIM28-201ENST00000253024 HSP90B1P14625 803 aaKnown RBP25.46■■□□□ 1.67
TRIM28-201ENST00000253024 CCDC183Q5T5S1 534 aa25.46■■□□□ 1.67
TRIM28-201ENST00000253024 NEURL1BA8MQ27 555 aa25.45■■□□□ 1.66
TRIM28-201ENST00000253024 ALDH1L1O75891 902 aa25.45■■□□□ 1.66
TRIM28-201ENST00000253024 BLOC1S2Q6QNY1 142 aa25.45■■□□□ 1.66
TRIM28-201ENST00000253024 LRRC37A3O60309 1634 aa25.45■■□□□ 1.66
TRIM28-201ENST00000253024 UQCRHLA0A096LP55 91 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 UQCRHP07919 91 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 FGD1P98174 961 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 CHST3Q7LGC8 479 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 DBNDD2Q9BQY9 259 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 CCDC39Q9UFE4 941 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 HOXB7P09629 217 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.44■■□□□ 1.66
TRIM28-201ENST00000253024 ZSWIM6Q9HCJ5 1215 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 A0A0G2JLW4 131 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 LARP1Q6PKG0 1096 aaKnown RBP25.44■■□□□ 1.66
TRIM28-201ENST00000253024 FBXW7Q969H0 707 aa25.44■■□□□ 1.66
TRIM28-201ENST00000253024 GCKRQ14397 625 aa25.43■■□□□ 1.66
TRIM28-201ENST00000253024 ERC1Q8IUD2 1116 aa25.43■■□□□ 1.66
TRIM28-201ENST00000253024 TTC5Q8N0Z6 440 aa25.43■■□□□ 1.66
TRIM28-201ENST00000253024 VSIG10Q8N0Z9 540 aa25.43■■□□□ 1.66
TRIM28-201ENST00000253024 DBNLQ9UJU6 430 aaKnown RBP25.43■■□□□ 1.66
TRIM28-201ENST00000253024 PXDNLA1KZ92 1463 aa25.43■■□□□ 1.66
TRIM28-201ENST00000253024 A0A087WZG4 1122 aa25.43■■□□□ 1.66
TRIM28-201ENST00000253024 LIG1P18858 919 aa25.43■■□□□ 1.66
TRIM28-201ENST00000253024 UBE2HP62256 183 aa25.43■■□□□ 1.66
TRIM28-201ENST00000253024 MARF1Q9Y4F3 1742 aaKnown RBP25.43■■□□□ 1.66
TRIM28-201ENST00000253024 VPS53Q5VIR6 699 aa25.42■■□□□ 1.66
TRIM28-201ENST00000253024 ANKRD13DQ6ZTN6 518 aa25.42■■□□□ 1.66
TRIM28-201ENST00000253024 A0A087WWV3 80 aa25.42■■□□□ 1.66
TRIM28-201ENST00000253024 PHF14O94880 888 aa25.42■■□□□ 1.66
TRIM28-201ENST00000253024 TTC6Q86TZ1 520 aa25.42■■□□□ 1.66
TRIM28-201ENST00000253024 AP5Z1O43299 807 aa25.41■■□□□ 1.66
TRIM28-201ENST00000253024 MTX1Q13505 466 aa25.41■■□□□ 1.66
TRIM28-201ENST00000253024 TIMM10P62072 90 aa25.4■■□□□ 1.66
TRIM28-201ENST00000253024 ZNF594Q96JF6 807 aaPredicted RBP25.4■■□□□ 1.66
TRIM28-201ENST00000253024 MAP4K1Q92918 833 aa25.4■■□□□ 1.66
TRIM28-201ENST00000253024 ERBB3P21860 1342 aa25.4■■□□□ 1.66
TRIM28-201ENST00000253024 GUCY1B3Q02153 619 aa25.39■■□□□ 1.66
TRIM28-201ENST00000253024 HSP90AB3PQ58FF7 597 aa25.39■■□□□ 1.66
TRIM28-201ENST00000253024 SLC52A2Q9HAB3 445 aa25.39■■□□□ 1.66
TRIM28-201ENST00000253024 RAB11FIP4Q86YS3 637 aa25.39■■□□□ 1.65
TRIM28-201ENST00000253024 ZBTB3Q9H5J0 574 aa25.39■■□□□ 1.65
TRIM28-201ENST00000253024 TUBGCP6Q96RT7 1819 aa25.39■■□□□ 1.65
TRIM28-201ENST00000253024 FER1L4A9Z1Z3 1794 aa25.38■■□□□ 1.65
TRIM28-201ENST00000253024 GOLGA6L4A6NEF3 574 aa25.38■■□□□ 1.65
TRIM28-201ENST00000253024 TATP17735 454 aaPredicted RBP25.38■■□□□ 1.65
TRIM28-201ENST00000253024 LMBR1LQ6UX01 489 aa25.38■■□□□ 1.65
TRIM28-201ENST00000253024 FTOQ9C0B1 505 aaKnown RBP eCLIP25.38■■□□□ 1.654e-6■■■□□ 17
TRIM28-201ENST00000253024 NFAT5O94916 1531 aa25.38■■□□□ 1.65
TRIM28-201ENST00000253024 KDM4AO75164 1064 aa25.38■■□□□ 1.65
TRIM28-201ENST00000253024 NPHP3Q7Z494 1330 aa25.37■■□□□ 1.65
TRIM28-201ENST00000253024 CCT2P78371 535 aaKnown RBP25.37■■□□□ 1.65
TRIM28-201ENST00000253024 TOB2Q14106 344 aaPredicted RBP25.36■■□□□ 1.65
TRIM28-201ENST00000253024 LUZP1Q86V48 1076 aa25.36■■□□□ 1.65
TRIM28-201ENST00000253024 GOLIM4O00461 696 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms