RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	TOF1	P53840	1238 aa		13.16	□□□□□ -0.3
BDF1	YLR399C	YNL040W	P53960	456 aa	Predicted RBP	13.16	□□□□□ -0.3
BDF1	YLR399C	SIN4	P32259	974 aa		13.16	□□□□□ -0.3
BDF1	YLR399C	GLO3	P38682	493 aa	Known RBP	13.16	□□□□□ -0.3
BDF1	YLR399C	SHE9	Q04172	456 aa		13.16	□□□□□ -0.3
BDF1	YLR399C	ENO2	P00925	437 aa	Known RBP	13.15	□□□□□ -0.3
BDF1	YLR399C	ADH4	P10127	382 aa		13.15	□□□□□ -0.3
BDF1	YLR399C	RNR3	P21672	869 aa	Known RBP	13.15	□□□□□ -0.3
BDF1	YLR399C	CBF2	P32504	956 aa		13.15	□□□□□ -0.3
BDF1	YLR399C	SMC1	P32908	1225 aa		13.15	□□□□□ -0.3
BDF1	YLR399C	MET7	Q08645	548 aa		13.15	□□□□□ -0.3
BDF1	YLR399C	CLF1	Q12309	687 aa	Predicted RBP	13.15	□□□□□ -0.3
BDF1	YLR399C	POM152	P39685	1337 aa		13.14	□□□□□ -0.31
BDF1	YLR399C	SSB1	P11484	613 aa	Known RBP	13.14	□□□□□ -0.31
BDF1	YLR399C	STI1	P15705	589 aa	Known RBP RIP-Chip data	13.14	□□□□□ -0.31	not detected
BDF1	YLR399C	YME1	P32795	747 aa		13.14	□□□□□ -0.31
BDF1	YLR399C	NUP60	P39705	539 aa		13.14	□□□□□ -0.31
BDF1	YLR399C	SSB2	P40150	613 aa	Known RBP	13.14	□□□□□ -0.31
BDF1	YLR399C	VIP1	Q06685	1146 aa	Known RBP	13.14	□□□□□ -0.31
BDF1	YLR399C	CIR2	Q08822	631 aa		13.14	□□□□□ -0.31
BDF1	YLR399C	AIM41	Q12032	185 aa		13.14	□□□□□ -0.31
BDF1	YLR399C	PYC2	P32327	1180 aa	Known RBP	13.14	□□□□□ -0.31
BDF1	YLR399C	EFB1	P32471	206 aa	Known RBP	13.14	□□□□□ -0.31
BDF1	YLR399C	PPX1	P38698	397 aa		13.14	□□□□□ -0.31
BDF1	YLR399C	RIM8	P53179	542 aa		13.14	□□□□□ -0.31
BDF1	YLR399C	YDR341C	Q05506	607 aa	Known RBP	13.14	□□□□□ -0.31
BDF1	YLR399C	CLN3	P13365	580 aa		13.13	□□□□□ -0.31
BDF1	YLR399C	BUD2	P33314	1104 aa		13.13	□□□□□ -0.31
BDF1	YLR399C	NIP100	P33420	868 aa		13.13	□□□□□ -0.31
BDF1	YLR399C	SEG2	P34250	1132 aa		13.13	□□□□□ -0.31
BDF1	YLR399C	PET10	P36139	283 aa		13.13	□□□□□ -0.31
BDF1	YLR399C	YGL138C	P53122	345 aa		13.13	□□□□□ -0.31
BDF1	YLR399C	KRE28	Q04431	385 aa		13.13	□□□□□ -0.31
BDF1	YLR399C	ARG82	P07250	355 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	PRI1	P10363	409 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	MAK31	P23059	88 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	SMY1	P32364	656 aa	Known RBP	13.12	□□□□□ -0.31
BDF1	YLR399C	ERP5	P38819	212 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	YIR042C	P40586	236 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	SFB2	P53953	876 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	SPO21	Q12411	609 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	RPL24A	P04449	155 aa	Known RBP	13.12	□□□□□ -0.31
BDF1	YLR399C	VMA4	P22203	233 aa	Known RBP	13.12	□□□□□ -0.31
BDF1	YLR399C	CDC48	P25694	835 aa	Known RBP	13.12	□□□□□ -0.31
BDF1	YLR399C	NPL6	P32832	435 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	SPL2	P38839	148 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	STT3	P39007	718 aa	Known RBP	13.12	□□□□□ -0.31
BDF1	YLR399C	IOC3	P43596	787 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	SDA1	P53313	767 aa	Known RBP	13.12	□□□□□ -0.31
BDF1	YLR399C	JJJ1	P53863	590 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	ASI1	P54074	624 aa		13.12	□□□□□ -0.31
BDF1	YLR399C	NAT1	P12945	854 aa	Known RBP	13.11	□□□□□ -0.31
BDF1	YLR399C	CDC3	P32457	520 aa	Known RBP	13.11	□□□□□ -0.31
BDF1	YLR399C	ECM2	P38241	364 aa	Known RBP	13.11	□□□□□ -0.31
BDF1	YLR399C	EMW1	P42842	904 aa	Known RBP	13.11	□□□□□ -0.31
BDF1	YLR399C	LGE1	Q02796	332 aa	Known RBP	13.11	□□□□□ -0.31
BDF1	YLR399C	VPS35	P34110	944 aa		13.11	□□□□□ -0.31
BDF1	YLR399C	YBL055C	P34220	418 aa	Predicted RBP	13.11	□□□□□ -0.31
BDF1	YLR399C	MYO3	P36006	1272 aa		13.11	□□□□□ -0.31
BDF1	YLR399C	YRB1	P41920	201 aa	Known RBP	13.11	□□□□□ -0.31
BDF1	YLR399C	YGR153W	P48238	217 aa		13.11	□□□□□ -0.31
BDF1	YLR399C	SHE10	P53075	577 aa		13.11	□□□□□ -0.31
BDF1	YLR399C	ATG1	P53104	897 aa		13.11	□□□□□ -0.31
BDF1	YLR399C	EEB1	Q02891	456 aa		13.11	□□□□□ -0.31
BDF1	YLR399C	YPR078C	Q06813	372 aa		13.11	□□□□□ -0.31
BDF1	YLR399C	GCD6	P32501	712 aa	Known RBP	13.1	□□□□□ -0.31
BDF1	YLR399C	TOS3	P43637	560 aa		13.1	□□□□□ -0.31
BDF1	YLR399C	FMS1	P50264	508 aa		13.1	□□□□□ -0.31
BDF1	YLR399C	ACM1	Q08981	209 aa		13.1	□□□□□ -0.31
BDF1	YLR399C	PHM7	Q12252	991 aa		13.1	□□□□□ -0.31
BDF1	YLR399C	PRT1	P06103	763 aa	Known RBP	13.09	□□□□□ -0.31
BDF1	YLR399C	SPS22	P25380	463 aa		13.09	□□□□□ -0.31
BDF1	YLR399C	RCK2	P38623	610 aa		13.09	□□□□□ -0.31
BDF1	YLR399C	IST1	P53843	298 aa	Predicted RBP	13.09	□□□□□ -0.31
BDF1	YLR399C	SNA3	P14359	133 aa		13.09	□□□□□ -0.31
BDF1	YLR399C	RPC19	P28000	142 aa	Known RBP	13.09	□□□□□ -0.31
BDF1	YLR399C	PLC1	P32383	869 aa		13.09	□□□□□ -0.31
BDF1	YLR399C	YGR021W	P53212	290 aa		13.09	□□□□□ -0.31
BDF1	YLR399C	UTP6	Q02354	440 aa	Known RBP	13.09	□□□□□ -0.31
BDF1	YLR399C	GTB1	Q04924	702 aa		13.09	□□□□□ -0.31
BDF1	YLR399C	INM2	Q05533	292 aa		13.09	□□□□□ -0.31
BDF1	YLR399C	ADY4	Q05955	493 aa		13.09	□□□□□ -0.31
BDF1	YLR399C	TSR1	Q07381	788 aa	Known RBP	13.09	□□□□□ -0.31
BDF1	YLR399C	SBP1	P10080	294 aa	Known RBP	13.08	□□□□□ -0.32
BDF1	YLR399C	PTC3	P34221	468 aa	Known RBP	13.08	□□□□□ -0.32
BDF1	YLR399C	THI6	P41835	540 aa		13.08	□□□□□ -0.32
BDF1	YLR399C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	13.08	□□□□□ -0.32	not detected
BDF1	YLR399C	MIP1	P15801	1254 aa		13.08	□□□□□ -0.32
BDF1	YLR399C	THR4	P16120	514 aa	Known RBP	13.08	□□□□□ -0.32
BDF1	YLR399C	SEC20	P28791	383 aa		13.08	□□□□□ -0.32
BDF1	YLR399C	LCP5	P40079	357 aa	Predicted RBP	13.08	□□□□□ -0.32
BDF1	YLR399C	COS6	P53344	381 aa		13.08	□□□□□ -0.32
BDF1	YLR399C	MDM1	Q01846	1127 aa		13.08	□□□□□ -0.32
BDF1	YLR399C	GPI10	P30777	616 aa		13.07	□□□□□ -0.32
BDF1	YLR399C	KES1	P35844	434 aa	Known RBP	13.07	□□□□□ -0.32
BDF1	YLR399C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	13.07	□□□□□ -0.32	not detected
BDF1	YLR399C	HSM3	P38348	480 aa		13.07	□□□□□ -0.32
BDF1	YLR399C	STN1	P38960	494 aa		13.07	□□□□□ -0.32
BDF1	YLR399C	SIP5	P40210	489 aa	Known RBP	13.07	□□□□□ -0.32
BDF1	YLR399C	ATG32	P40458	529 aa		13.07	□□□□□ -0.32

Retrieved 100 of 5,963 RNA–protein pairs in 87.1 ms