RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT8	YLR055C	SMC2	P38989	1170 aa	Known RBP	11.98	□□□□□ -0.49
SPT8	YLR055C	GPB2	P39717	880 aa		11.98	□□□□□ -0.49
SPT8	YLR055C	CCM1	P48237	864 aa	Predicted RBP	11.98	□□□□□ -0.49
SPT8	YLR055C	CWC22	P53333	577 aa	Known RBP	11.98	□□□□□ -0.49
SPT8	YLR055C	VTI1	Q04338	217 aa		11.98	□□□□□ -0.49
SPT8	YLR055C	SMD2	Q06217	110 aa	Known RBP	11.98	□□□□□ -0.49
SPT8	YLR055C	YPL216W	Q08964	1102 aa		11.98	□□□□□ -0.49
SPT8	YLR055C	THR4	P16120	514 aa	Known RBP	11.97	□□□□□ -0.49
SPT8	YLR055C	MAK11	P20484	414 aa	Known RBP	11.97	□□□□□ -0.49
SPT8	YLR055C	PKC1	P24583	1151 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	EUG1	P32474	517 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	UTR4	P32626	227 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	YKL091C	P33324	310 aa	Known RBP	11.97	□□□□□ -0.49
SPT8	YLR055C	YGR153W	P48238	217 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	YLR225C	Q05948	407 aa	Known RBP	11.97	□□□□□ -0.49
SPT8	YLR055C	PLP2	Q12017	286 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	TY3A-G	Q12173	290 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	TY3A-I	Q99219	290 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	GFA1	P14742	717 aa	Known RBP	11.97	□□□□□ -0.49
SPT8	YLR055C	TDA3	P38758	523 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	ATG1	P53104	897 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	YAF9	P53930	226 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	RKM4	Q12504	494 aa		11.97	□□□□□ -0.49
SPT8	YLR055C	PXA1	P41909	870 aa		11.96	□□□□□ -0.49
SPT8	YLR055C	SDA1	P53313	767 aa	Known RBP	11.96	□□□□□ -0.49
SPT8	YLR055C	URH1	Q04179	340 aa		11.96	□□□□□ -0.49
SPT8	YLR055C	SPH1	Q06160	661 aa		11.96	□□□□□ -0.49
SPT8	YLR055C	DAS2	Q12084	232 aa		11.96	□□□□□ -0.49
SPT8	YLR055C	SEC8	P32855	1065 aa		11.95	□□□□□ -0.5
SPT8	YLR055C	SHP1	P34223	423 aa		11.95	□□□□□ -0.5
SPT8	YLR055C	LAS1	P36146	502 aa	Predicted RBP	11.95	□□□□□ -0.5
SPT8	YLR055C	YSW1	P38280	609 aa		11.95	□□□□□ -0.5
SPT8	YLR055C	THI6	P41835	540 aa		11.95	□□□□□ -0.5
SPT8	YLR055C	SAS3	P34218	831 aa		11.95	□□□□□ -0.5
SPT8	YLR055C	OLA1	P38219	394 aa	Known RBP	11.95	□□□□□ -0.5
SPT8	YLR055C	SIP3	P38717	1229 aa		11.95	□□□□□ -0.5
SPT8	YLR055C	BNI5	P53890	448 aa	Known RBP	11.95	□□□□□ -0.5
SPT8	YLR055C	DUS3	Q06053	668 aa	Known RBP	11.95	□□□□□ -0.5
SPT8	YLR055C	OXR1	Q08952	273 aa		11.95	□□□□□ -0.5
SPT8	YLR055C	FOB1	O13329	566 aa		11.94	□□□□□ -0.5
SPT8	YLR055C	JIP3	O13555	125 aa		11.94	□□□□□ -0.5
SPT8	YLR055C	CDC19	P00549	500 aa	Known RBP	11.94	□□□□□ -0.5
SPT8	YLR055C	RPC53	P25441	422 aa		11.94	□□□□□ -0.5
SPT8	YLR055C	GCG1	P32656	232 aa	Known RBP	11.94	□□□□□ -0.5
SPT8	YLR055C	PET10	P36139	283 aa		11.94	□□□□□ -0.5
SPT8	YLR055C	SPP381	P38282	291 aa	Predicted RBP	11.94	□□□□□ -0.5
SPT8	YLR055C	SIC1	P38634	284 aa		11.94	□□□□□ -0.5
SPT8	YLR055C	NCS6	P53088	359 aa		11.94	□□□□□ -0.5
SPT8	YLR055C	LIF1	P53150	421 aa		11.94	□□□□□ -0.5
SPT8	YLR055C	SLK19	Q08581	821 aa	Known RBP	11.94	□□□□□ -0.5
SPT8	YLR055C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	11.93	□□□□□ -0.5	not detected
SPT8	YLR055C	ISW1	P38144	1129 aa		11.93	□□□□□ -0.5
SPT8	YLR055C	KIC1	P38692	1080 aa		11.93	□□□□□ -0.5
SPT8	YLR055C	PAN5	P38787	379 aa		11.93	□□□□□ -0.5
SPT8	YLR055C	SET5	P38890	526 aa	Known RBP	11.93	□□□□□ -0.5
SPT8	YLR055C	RET3	P53600	189 aa		11.93	□□□□□ -0.5
SPT8	YLR055C	PRP3	Q03338	469 aa	Predicted RBP	11.93	□□□□□ -0.5
SPT8	YLR055C	DUS4	Q06063	367 aa		11.93	□□□□□ -0.5
SPT8	YLR055C	APL5	Q08951	932 aa	Known RBP	11.93	□□□□□ -0.5
SPT8	YLR055C	ARD1	P07347	238 aa	Predicted RBP	11.93	□□□□□ -0.5
SPT8	YLR055C	TUP1	P16649	713 aa		11.93	□□□□□ -0.5
SPT8	YLR055C	MCR1	P36060	302 aa	Known RBP	11.93	□□□□□ -0.5
SPT8	YLR055C	SUL1	P38359	859 aa		11.93	□□□□□ -0.5
SPT8	YLR055C	MRX1	P40050	688 aa		11.93	□□□□□ -0.5
SPT8	YLR055C	YGR125W	P53273	1036 aa		11.93	□□□□□ -0.5
SPT8	YLR055C	ARG4	P04076	463 aa	Predicted RBP	11.92	□□□□□ -0.5
SPT8	YLR055C	MIP1	P15801	1254 aa		11.92	□□□□□ -0.5
SPT8	YLR055C	BTN2	P53286	410 aa		11.92	□□□□□ -0.5
SPT8	YLR055C	ADY4	Q05955	493 aa		11.92	□□□□□ -0.5
SPT8	YLR055C	GUD1	Q07729	489 aa		11.92	□□□□□ -0.5
SPT8	YLR055C	SIL1	Q08199	421 aa		11.92	□□□□□ -0.5
SPT8	YLR055C	SSB1	P11484	613 aa	Known RBP	11.91	□□□□□ -0.5
SPT8	YLR055C	PMR1	P13586	950 aa		11.91	□□□□□ -0.5
SPT8	YLR055C	UGA4	P32837	571 aa		11.91	□□□□□ -0.5
SPT8	YLR055C	SSB2	P40150	613 aa	Known RBP	11.91	□□□□□ -0.5
SPT8	YLR055C	TAD1	P53065	400 aa		11.91	□□□□□ -0.5
SPT8	YLR055C	DSE4	P53753	1117 aa		11.91	□□□□□ -0.5
SPT8	YLR055C	BUL2	Q03758	920 aa	Known RBP	11.91	□□□□□ -0.5
SPT8	YLR055C	CSM3	Q04659	317 aa		11.91	□□□□□ -0.5
SPT8	YLR055C	PUS1	Q12211	544 aa	Known RBP	11.91	□□□□□ -0.5
SPT8	YLR055C	XRS2	P33301	854 aa		11.9	□□□□□ -0.5
SPT8	YLR055C	HEL1	P36113	551 aa		11.9	□□□□□ -0.5
SPT8	YLR055C	YGR273C	P53329	174 aa		11.9	□□□□□ -0.5
SPT8	YLR055C	CIT3	P43635	486 aa		11.9	□□□□□ -0.5
SPT8	YLR055C	VPS72	Q03388	795 aa		11.9	□□□□□ -0.5
SPT8	YLR055C	SLD5	Q03406	294 aa		11.9	□□□□□ -0.5
SPT8	YLR055C	ZRT2	Q12436	422 aa		11.9	□□□□□ -0.5
SPT8	YLR055C	CDC10	P25342	322 aa	Known RBP	11.89	□□□□□ -0.51
SPT8	YLR055C	UBC6	P33296	250 aa	Predicted RBP	11.89	□□□□□ -0.51
SPT8	YLR055C	JNM1	P36224	373 aa		11.89	□□□□□ -0.51
SPT8	YLR055C	AIM33	Q04516	312 aa		11.89	□□□□□ -0.51
SPT8	YLR055C	ERP3	Q12403	225 aa		11.89	□□□□□ -0.51
SPT8	YLR055C	SRO9	P25567	434 aa	Known RBP	11.88	□□□□□ -0.51
SPT8	YLR055C	ORC6	P38826	435 aa		11.88	□□□□□ -0.51
SPT8	YLR055C	RIO2	P40160	425 aa	Known RBP	11.88	□□□□□ -0.51
SPT8	YLR055C	TOS3	P43637	560 aa		11.88	□□□□□ -0.51
SPT8	YLR055C	ARP6	Q12509	438 aa		11.88	□□□□□ -0.51
SPT8	YLR055C	SEC39	Q12745	709 aa		11.88	□□□□□ -0.51
SPT8	YLR055C	ECM29	P38737	1868 aa		11.88	□□□□□ -0.51
SPT8	YLR055C	ISY1	P21374	235 aa	Predicted RBP	11.88	□□□□□ -0.51

Retrieved 100 of 5,963 RNA–protein pairs in 120.1 ms