RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
RTR1	YER139C	ESF1	Q06344	628 aa	Known RBP	4.65	□□□□□ -1.67
RTR1	YER139C	TMA46	Q12000	345 aa	Known RBP	4.65	□□□□□ -1.67
RTR1	YER139C	ERG4	P25340	473 aa		4.64	□□□□□ -1.67
RTR1	YER139C	FUN30	P31380	1131 aa		4.64	□□□□□ -1.67
RTR1	YER139C	CUE2	P36075	443 aa	Known RBP	4.64	□□□□□ -1.67
RTR1	YER139C	POL32	P47110	350 aa		4.64	□□□□□ -1.67
RTR1	YER139C	IRC10	Q08118	586 aa		4.64	□□□□□ -1.67
RTR1	YER139C	GUP2	Q08929	609 aa		4.64	□□□□□ -1.67
RTR1	YER139C	ATE1	P16639	503 aa		4.63	□□□□□ -1.67
RTR1	YER139C	DUT1	P33317	147 aa		4.63	□□□□□ -1.67
RTR1	YER139C	YKL107W	P34251	309 aa		4.63	□□□□□ -1.67
RTR1	YER139C	ATG19	P35193	415 aa		4.63	□□□□□ -1.67
RTR1	YER139C	YGL176C	P46945	554 aa		4.63	□□□□□ -1.67
RTR1	YER139C	YJR107W	P47145	328 aa		4.63	□□□□□ -1.67
RTR1	YER139C	MUK1	Q02866	612 aa		4.63	□□□□□ -1.67
RTR1	YER139C	RKM4	Q12504	494 aa		4.63	□□□□□ -1.67
RTR1	YER139C	NPP2	P39997	493 aa		4.62	□□□□□ -1.67
RTR1	YER139C	EEB1	Q02891	456 aa		4.62	□□□□□ -1.67
RTR1	YER139C	ACF2	Q12168	779 aa		4.62	□□□□□ -1.67
RTR1	YER139C	TRP4	P07285	380 aa	Predicted RBP	4.61	□□□□□ -1.67
RTR1	YER139C	MTH1	P35198	433 aa		4.61	□□□□□ -1.67
RTR1	YER139C	TIM44	Q01852	431 aa		4.61	□□□□□ -1.67
RTR1	YER139C	UPC2	Q12151	913 aa		4.61	□□□□□ -1.67
RTR1	YER139C	TRM13	Q12383	476 aa		4.61	□□□□□ -1.67
RTR1	YER139C	TYW3	P53177	273 aa		4.6	□□□□□ -1.67
RTR1	YER139C	RNT1	Q02555	471 aa		4.6	□□□□□ -1.67
RTR1	YER139C	GND2	P53319	492 aa		4.59	□□□□□ -1.67
RTR1	YER139C	SFB2	P53953	876 aa		4.59	□□□□□ -1.67
RTR1	YER139C	PPR1	P07272	904 aa	Predicted RBP	4.58	□□□□□ -1.68
RTR1	YER139C	SAH1	P39954	449 aa	Known RBP	4.58	□□□□□ -1.68
RTR1	YER139C	SPC42	P36094	363 aa		4.57	□□□□□ -1.68
RTR1	YER139C	SLU7	Q02775	382 aa	Known RBP	4.57	□□□□□ -1.68
RTR1	YER139C	ALG7	P07286	448 aa		4.56	□□□□□ -1.68
RTR1	YER139C	CDC34	P14682	295 aa		4.56	□□□□□ -1.68
RTR1	YER139C	SED4	P25365	1065 aa		4.56	□□□□□ -1.68
RTR1	YER139C	STE14	P32584	239 aa		4.56	□□□□□ -1.68
RTR1	YER139C	SLD2	P34252	453 aa		4.56	□□□□□ -1.68
RTR1	YER139C	YLR225C	Q05948	407 aa	Known RBP	4.56	□□□□□ -1.68
RTR1	YER139C	RRP15	Q06511	250 aa	Predicted RBP	4.56	□□□□□ -1.68
RTR1	YER139C	ESC2	Q06340	456 aa		4.54	□□□□□ -1.68
RTR1	YER139C	RPC82	P32349	654 aa		4.53	□□□□□ -1.68
RTR1	YER139C	CDC12	P32468	407 aa	Known RBP	4.53	□□□□□ -1.68
RTR1	YER139C	PEX2	P32800	271 aa		4.53	□□□□□ -1.68
RTR1	YER139C	MET10	P39692	1035 aa		4.53	□□□□□ -1.68
RTR1	YER139C	YER158C	P40095	573 aa		4.53	□□□□□ -1.68
RTR1	YER139C	SDS3	P40505	327 aa		4.53	□□□□□ -1.68
RTR1	YER139C	RAI1	P53063	387 aa	Known RBP	4.53	□□□□□ -1.68
RTR1	YER139C	ERG5	P54781	538 aa		4.53	□□□□□ -1.68
RTR1	YER139C	SPO20	Q04359	397 aa		4.53	□□□□□ -1.68
RTR1	YER139C	PET112	P33893	541 aa		4.52	□□□□□ -1.69
RTR1	YER139C	RMD1	Q03441	430 aa		4.52	□□□□□ -1.69
RTR1	YER139C	NDJ1	Q12366	352 aa		4.52	□□□□□ -1.69
RTR1	YER139C	YPR196W	Q06595	470 aa		4.51	□□□□□ -1.69
RTR1	YER139C	HBT1	Q07653	1046 aa	Known RBP	4.51	□□□□□ -1.69
RTR1	YER139C	SNF7	P39929	240 aa	Known RBP	4.5	□□□□□ -1.69
RTR1	YER139C	SRP1	Q02821	542 aa	Known RBP	4.5	□□□□□ -1.69
RTR1	YER139C	SEC21	P32074	935 aa	Known RBP	4.49	□□□□□ -1.69
RTR1	YER139C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.49	□□□□□ -1.69	not detected
RTR1	YER139C	PPS1	P38148	807 aa		4.49	□□□□□ -1.69
RTR1	YER139C	GYP7	P48365	746 aa		4.49	□□□□□ -1.69
RTR1	YER139C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.49	□□□□□ -1.69	not detected
RTR1	YER139C	ABD1	P32783	436 aa	Predicted RBP	4.48	□□□□□ -1.69
RTR1	YER139C	SSL1	Q04673	461 aa	Predicted RBP	4.48	□□□□□ -1.69
RTR1	YER139C	PEX19	Q07418	342 aa		4.48	□□□□□ -1.69
RTR1	YER139C	FRE5	Q08908	694 aa		4.48	□□□□□ -1.69
RTR1	YER139C	MRH1	Q12117	320 aa	Predicted RBP	4.48	□□□□□ -1.69
RTR1	YER139C	TSL1	P38427	1098 aa	Known RBP	4.47	□□□□□ -1.69
RTR1	YER139C	DUS3	Q06053	668 aa	Known RBP	4.47	□□□□□ -1.69
RTR1	YER139C	SUT2	Q12286	268 aa		4.47	□□□□□ -1.69
RTR1	YER139C	BNR1	P40450	1375 aa		4.47	□□□□□ -1.69
RTR1	YER139C	NOT3	P06102	836 aa	Known RBP	4.46	□□□□□ -1.7
RTR1	YER139C	MBP1	P39678	833 aa		4.46	□□□□□ -1.7
RTR1	YER139C	YHL017W	P38745	532 aa		4.45	□□□□□ -1.7
RTR1	YER139C	MET3	P08536	511 aa		4.44	□□□□□ -1.7
RTR1	YER139C	CTF13	P35203	478 aa		4.44	□□□□□ -1.7
RTR1	YER139C	YKR078W	P36158	585 aa	Known RBP	4.44	□□□□□ -1.7
RTR1	YER139C	ELO3	P40319	345 aa		4.44	□□□□□ -1.7
RTR1	YER139C	DAS1	P47005	663 aa		4.44	□□□□□ -1.7
RTR1	YER139C	OYE2	Q03558	400 aa	Known RBP	4.44	□□□□□ -1.7
RTR1	YER139C	FBP1	P09201	348 aa		4.43	□□□□□ -1.7
RTR1	YER139C	CDC48	P25694	835 aa	Known RBP	4.43	□□□□□ -1.7
RTR1	YER139C	PPZ2	P33329	710 aa		4.43	□□□□□ -1.7
RTR1	YER139C	STE13	P33894	931 aa		4.43	□□□□□ -1.7
RTR1	YER139C	TDP1	P38319	544 aa		4.43	□□□□□ -1.7
RTR1	YER139C	YKE2	P52553	114 aa		4.43	□□□□□ -1.7
RTR1	YER139C	YGR053C	P53234	283 aa		4.43	□□□□□ -1.7
RTR1	YER139C	DLT1	Q04216	342 aa		4.43	□□□□□ -1.7
RTR1	YER139C	TUB3	P09734	445 aa	Known RBP	4.42	□□□□□ -1.7
RTR1	YER139C	MDM10	P18409	493 aa		4.42	□□□□□ -1.7
RTR1	YER139C	NPP1	P25353	742 aa		4.42	□□□□□ -1.7
RTR1	YER139C	RPD3	P32561	433 aa		4.42	□□□□□ -1.7
RTR1	YER139C	MNR2	P35724	969 aa		4.42	□□□□□ -1.7
RTR1	YER139C	YBR238C	P38330	731 aa	Known RBP	4.42	□□□□□ -1.7
RTR1	YER139C	SDP1	P40479	209 aa		4.42	□□□□□ -1.7
RTR1	YER139C	FAA4	P47912	694 aa	Known RBP	4.42	□□□□□ -1.7
RTR1	YER139C	IMO32	P53219	342 aa		4.42	□□□□□ -1.7
RTR1	YER139C	ADY4	Q05955	493 aa		4.42	□□□□□ -1.7
RTR1	YER139C	AFT2	Q08957	416 aa		4.42	□□□□□ -1.7
RTR1	YER139C	TRM11	Q12463	433 aa		4.42	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 96.8 ms