RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	MDM1	Q01846	1127 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	ECM23	Q02710	187 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	STE20	Q03497	939 aa	Known RBP	2.7	□□□□□ -1.98
UBP1	YDL122W	MAG2	Q06436	670 aa	Known RBP	2.7	□□□□□ -1.98
UBP1	YDL122W	GPR1	Q12361	961 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	DRE2	P36152	348 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	BRN1	P38170	754 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	OSH7	P38755	437 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	TAF1	P46677	1066 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	CCT8	P47079	568 aa	Known RBP	2.7	□□□□□ -1.98
UBP1	YDL122W	LEE1	Q02799	301 aa	Known RBP	2.7	□□□□□ -1.98
UBP1	YDL122W	LAP2	Q10740	671 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	SNU66	Q12420	587 aa	Predicted RBP	2.7	□□□□□ -1.98
UBP1	YDL122W	UTP20	P35194	2493 aa	Known RBP	2.69	□□□□□ -1.98
UBP1	YDL122W	BI4	P03879	638 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	MAS2	P11914	482 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	SEC15	P22224	910 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	PEP12	P32854	288 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	CSE1	P33307	960 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	MDL2	P33311	773 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	ERP5	P38819	212 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	CCC2	P38995	1004 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	KTR7	P40504	517 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	ZAP1	P47043	880 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	TAM41	P53230	385 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	PNG1	Q02890	363 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	ISU1	Q03020	165 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	TY1A-MR1	Q04215	440 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	YOL057W	Q08225	711 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	CCH1	P50077	2039 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	TY1B-A	O13527	1196 aa	Known RBP	2.69	□□□□□ -1.98
UBP1	YDL122W	SGF29	P25554	259 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	PTK1	P36002	662 aa	Predicted RBP	2.69	□□□□□ -1.98
UBP1	YDL122W	OCA5	P38738	679 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	SDS3	P40505	327 aa		2.69	□□□□□ -1.98
UBP1	YDL122W	CUS1	Q02554	436 aa	Predicted RBP	2.69	□□□□□ -1.98
UBP1	YDL122W	CDC53	Q12018	815 aa	Known RBP	2.69	□□□□□ -1.98
UBP1	YDL122W	CET1	O13297	549 aa	Predicted RBP	2.68	□□□□□ -1.98
UBP1	YDL122W	RAD18	P10862	487 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	ACE2	P21192	770 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	MIA40	P36046	403 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	UBX7	P38349	436 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	ROG3	P43602	733 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	STP1	Q00947	519 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	KAR5	Q04746	504 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	YLR257W	Q06146	321 aa	Known RBP	2.68	□□□□□ -1.98
UBP1	YDL122W	YOR389W	Q08912	624 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	YPL278C	Q08990	100 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	ATG11	Q12527	1178 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	DBP7	P36120	742 aa	Known RBP	2.68	□□□□□ -1.98
UBP1	YDL122W	PCA1	P38360	1216 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	YHL050C	P38721	697 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	YHR219W	P38900	624 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	POL32	P47110	350 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	SPH1	Q06160	661 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	2.68	□□□□□ -1.98	not detected
UBP1	YDL122W	MPD2	Q99316	277 aa		2.68	□□□□□ -1.98
UBP1	YDL122W	CCP1	P00431	361 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	PIF1	P07271	859 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	RPL43A	P0CX25	92 aa	Known RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	RPL43B	P0CX26	92 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	RDS2	P19541	446 aa	Known RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	PRP9	P19736	530 aa	Known RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	MSH2	P25847	964 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	DAL1	P32375	460 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	UME6	P39001	836 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	NNF1	P47149	201 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	LYS5	P50113	272 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	SFB2	P53953	876 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	NSE5	Q03718	556 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	SVF1	Q05515	481 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	FPR4	Q06205	392 aa	Predicted RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	RRP15	Q06511	250 aa	Predicted RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	MCM16	Q12262	181 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	CYB2	P00175	591 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	CHO2	P05374	869 aa	Known RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	SBP1	P10080	294 aa	Known RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	KRS1	P15180	591 aa	Known RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	TKL1	P23254	680 aa	Known RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	SEC21	P32074	935 aa	Known RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	RPT3	P33298	428 aa	Known RBP	2.67	□□□□□ -1.98
UBP1	YDL122W	TGL1	P34163	548 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	MDJ1	P35191	511 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	FLR1	P38124	548 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	GYP8	P43570	497 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	DOS2	P54858	310 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	TMN2	Q04562	672 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	YMR321C	Q04898	105 aa		2.67	□□□□□ -1.98
UBP1	YDL122W	ATE1	P16639	503 aa		2.66	□□□□□ -1.98
UBP1	YDL122W	NAR1	P23503	491 aa	Known RBP	2.66	□□□□□ -1.98
UBP1	YDL122W	PRE8	P23639	250 aa		2.66	□□□□□ -1.98
UBP1	YDL122W	MCR1	P36060	302 aa	Known RBP	2.66	□□□□□ -1.98
UBP1	YDL122W	DLD3	P39976	496 aa	Known RBP	2.66	□□□□□ -1.98
UBP1	YDL122W	INP51	P40559	946 aa	Known RBP	2.66	□□□□□ -1.98
UBP1	YDL122W	SCS3	P53012	380 aa		2.66	□□□□□ -1.98
UBP1	YDL122W	UTP13	Q05946	817 aa	Known RBP	2.66	□□□□□ -1.98
UBP1	YDL122W	KEL3	Q08979	651 aa	Predicted RBP	2.66	□□□□□ -1.98
UBP1	YDL122W	TRL1	P09880	827 aa	Known RBP	2.66	□□□□□ -1.98
UBP1	YDL122W	SPC42	P36094	363 aa		2.66	□□□□□ -1.98
UBP1	YDL122W	PPX1	P38698	397 aa		2.66	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 117.6 ms