RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 TNS3Q68CZ2 1445 aa5.44□□□□□ -1.54
SCN1A-210ENST00000635776 TBC1D2BQ9UPU7 963 aa5.44□□□□□ -1.54
SCN1A-210ENST00000635776 LRRC59Q96AG4 307 aaKnown RBP5.44□□□□□ -1.54
SCN1A-210ENST00000635776 SMARCA5O60264 1052 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-210ENST00000635776 CLEC17AQ6ZS10 378 aa5.44□□□□□ -1.54
SCN1A-210ENST00000635776 LMTK3Q96Q04 1460 aa5.44□□□□□ -1.54
SCN1A-210ENST00000635776 SPATA31A3Q5VYP0 1347 aa5.44□□□□□ -1.54
SCN1A-210ENST00000635776 CPDO75976 1380 aa5.44□□□□□ -1.54
SCN1A-210ENST00000635776 GSPT1P15170 499 aaKnown RBP5.43□□□□□ -1.54
SCN1A-210ENST00000635776 ARXQ96QS3 562 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 MYD88Q99836 296 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 A0A087WZG4 1122 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 SGSM2O43147 1006 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 VSIG10Q8N0Z9 540 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 ANTXR1Q9H6X2 564 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 WDR17Q8IZU2 1322 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 CAVIN2O95810 425 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 NUTM1Q86Y26 1132 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 PHAXQ9H814 394 aaKnown RBP5.43□□□□□ -1.54
SCN1A-210ENST00000635776 COPRSQ9NQ92 184 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 KIAA2012Q0VF49 1180 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 USP42Q9H9J4 1324 aaKnown RBP5.43□□□□□ -1.54
SCN1A-210ENST00000635776 ABCC6O95255 1503 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 HMGN5P82970 282 aaKnown RBP5.43□□□□□ -1.54
SCN1A-210ENST00000635776 XPCQ01831 940 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-210ENST00000635776 TTF1Q15361 905 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-210ENST00000635776 XAGE3Q8WTP9 111 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 HSPA4P34932 840 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 VPS53Q5VIR6 699 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 MCTP1Q6DN14 999 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 COPS6Q7L5N1 327 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 CARD10Q9BWT7 1032 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 FER1L4A9Z1Z3 1794 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 SCAND2PQ9GZW5 306 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-210ENST00000635776 GRPEL1Q9HAV7 217 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 TPM4P67936 248 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 LGR6Q9HBX8 967 aa5.43□□□□□ -1.54
SCN1A-210ENST00000635776 H3BQV1 296 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 BAG4O95429 457 aaKnown RBP5.42□□□□□ -1.54
SCN1A-210ENST00000635776 GCKRQ14397 625 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 IFFO2Q5TF58 517 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 MYL6BP14649 208 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 KRT85P78386 507 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 TMX3Q96JJ7 454 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 GZF1Q9H116 711 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-210ENST00000635776 MST1RQ04912 1400 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 UQCRFS1P1P0C7P4 283 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 RALYLQ86SE5 291 aaKnown RBP5.42□□□□□ -1.54
SCN1A-210ENST00000635776 CFAP45Q9UL16 551 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 EXOC5O00471 708 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 SYNE3Q6ZMZ3 975 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 NEUROD6Q96NK8 337 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 CWC27Q6UX04 472 aaKnown RBP5.42□□□□□ -1.54
SCN1A-210ENST00000635776 SMARCC1Q92922 1105 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-210ENST00000635776 ZNF652Q9Y2D9 606 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 PNMA6EA0A0J9YXQ4 647 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 UVSSAQ2YD98 709 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 ATL3Q6DD88 541 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 NFATC2IPQ8NCF5 419 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 SLAIN2Q9P270 581 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 HS1BP3Q53T59 392 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 ZNF396Q96N95 335 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-210ENST00000635776 HELLSQ9NRZ9 838 aa5.42□□□□□ -1.54
SCN1A-210ENST00000635776 XRN1Q8IZH2 1706 aaKnown RBP5.42□□□□□ -1.54
SCN1A-210ENST00000635776 CDKL5O76039 1030 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 NASPP49321 788 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 FOXD4L1Q9NU39 408 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 KIF1AQ12756 1690 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 MCM5P33992 734 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 JAKMIP1Q96N16 626 aaKnown RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 RGS12O14924 1447 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 GNL3LQ9NVN8 582 aaKnown RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 UTYO14607 1347 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 NBPF7P0C2Y1 421 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 C16orf71Q8IYS4 520 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 ATP5JP18859 108 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 COL15A1P39059 1388 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 SETD1AO15047 1707 aaKnown RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 IGSF3O75054 1194 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 IFIT5Q13325 482 aaKnown RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 AK7Q96M32 723 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 TOPAZ1Q8N9V7 1692 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 PRPF40AO75400 957 aaKnown RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 GLIPR1L2Q4G1C9 344 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 TTC39AQ5SRH9 613 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 TMED8Q6PL24 325 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 CCDC39Q9UFE4 941 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 CUL4AQ13619 759 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 NACAP1Q9BZK3 213 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 ZSCAN16Q9H4T2 348 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 ZNF330Q9Y3S2 320 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-210ENST00000635776 CCDC171Q6TFL3 1326 aa5.41□□□□□ -1.54
SCN1A-210ENST00000635776 NEURL1BA8MQ27 555 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 CIAO1O76071 339 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 SART3Q15020 963 aaKnown RBP5.4□□□□□ -1.54
SCN1A-210ENST00000635776 KIF13AQ9H1H9 1805 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 AKAP12Q02952 1782 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 CPLX1O14810 134 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 NT5C2P49902 561 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 ZNF496Q96IT1 587 aaPredicted RBP5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms