RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 UQCRHLA0A096LP55 91 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 ATP5J2-PTCD1G3V325 749 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 PTCD1O75127 700 aaKnown RBP10.3□□□□□ -0.76
LIG4-204ENST00000611712 UQCRHP07919 91 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 HCLS1P14317 486 aaPredicted RBP10.3□□□□□ -0.76
LIG4-204ENST00000611712 UBE2HP62256 183 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 NBPF6Q5VWK0 638 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 UBE3BQ7Z3V4 1068 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 LINS1Q8NG48 757 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 NBPF4Q96M43 638 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 RBM8AQ9Y5S9 174 aaKnown RBP10.3□□□□□ -0.76
LIG4-204ENST00000611712 GCP02774 474 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 TOM1L2Q6ZVM7 507 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 SYTL4Q96C24 671 aaPredicted RBP10.3□□□□□ -0.76
LIG4-204ENST00000611712 TFIP11Q9UBB9 837 aaKnown RBP10.3□□□□□ -0.76
LIG4-204ENST00000611712 TTC41PQ6P2S7 1318 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 ZNF445P59923 1031 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 FKBP4Q02790 459 aaKnown RBP eCLIP10.3□□□□□ -0.76
LIG4-204ENST00000611712 MAP3K11Q16584 847 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 MYOM1P52179 1685 aa10.3□□□□□ -0.76
LIG4-204ENST00000611712 KINO60870 393 aaKnown RBP10.29□□□□□ -0.76
LIG4-204ENST00000611712 TPM3P06753 285 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 PDIA4P13667 645 aaKnown RBP10.29□□□□□ -0.76
LIG4-204ENST00000611712 SYNE3Q6ZMZ3 975 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 COPS6Q7L5N1 327 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 XAGE3Q8WTP9 111 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 KIF2CQ99661 725 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 SGSM2O43147 1006 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 OSBPL3Q9H4L5 887 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 IGSF1Q8N6C5 1336 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 KCNQ3O43525 872 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 RRP9O43818 475 aaKnown RBP10.29□□□□□ -0.76
LIG4-204ENST00000611712 EIF4A1P60842 406 aaKnown RBP10.29□□□□□ -0.76
LIG4-204ENST00000611712 GIMAP6Q6P9H5 292 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 SSH3Q8TE77 659 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 STRN4Q9NRL3 753 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 DIP2CQ9Y2E4 1556 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 MROH1Q8NDA8 1641 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 RNMTO43148 476 aaKnown RBP10.29□□□□□ -0.76
LIG4-204ENST00000611712 PIP4K2AP48426 406 aaPredicted RBP10.29□□□□□ -0.76
LIG4-204ENST00000611712 ANKRD13DQ6ZTN6 518 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 CCDC85AQ96PX6 553 aaPredicted RBP10.29□□□□□ -0.76
LIG4-204ENST00000611712 SCAND2PQ9GZW5 306 aaPredicted RBP10.29□□□□□ -0.76
LIG4-204ENST00000611712 PRDM11Q9NQV5 511 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 CEP126Q9P2H0 1117 aa10.29□□□□□ -0.76
LIG4-204ENST00000611712 CPSF1Q10570 1443 aaKnown RBP10.28□□□□□ -0.76
LIG4-204ENST00000611712 DTNBO60941 627 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 F13A1P00488 732 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 SYT1P21579 422 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 CCDC158Q5M9N0 1113 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 UNC5CLQ8IV45 518 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 ME1P48163 572 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 HMGN5P82970 282 aaKnown RBP10.28□□□□□ -0.76
LIG4-204ENST00000611712 DNM1Q05193 864 aaKnown RBP10.28□□□□□ -0.76
LIG4-204ENST00000611712 AOX1Q06278 1338 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 NFXL1Q6ZNB6 911 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 SNX14Q9Y5W7 946 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 IBTKQ9P2D0 1353 aaPredicted RBP10.28□□□□□ -0.76
LIG4-204ENST00000611712 ADCY5O95622 1261 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 HOXB7P09629 217 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 NMIQ13287 307 aaPredicted RBP10.28□□□□□ -0.76
LIG4-204ENST00000611712 TRIM29Q14134 588 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 CCDC57Q2TAC2 916 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 CKAP2LQ8IYA6 745 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 FMNL2Q96PY5 1086 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 TMEM63CQ9P1W3 806 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 CFAP45Q9UL16 551 aa10.28□□□□□ -0.76
LIG4-204ENST00000611712 KDM4AO75164 1064 aa10.27□□□□□ -0.76
LIG4-204ENST00000611712 HSPA4P34932 840 aa10.27□□□□□ -0.76
LIG4-204ENST00000611712 TTC39AQ5SRH9 613 aa10.27□□□□□ -0.76
LIG4-204ENST00000611712 IFNL2Q8IZJ0 200 aa10.27□□□□□ -0.76
LIG4-204ENST00000611712 ZNF396Q96N95 335 aaPredicted RBP10.27□□□□□ -0.76
LIG4-204ENST00000611712 MAP7D2Q96T17 732 aa10.27□□□□□ -0.76
LIG4-204ENST00000611712 PIK3C2BO00750 1634 aa10.27□□□□□ -0.77
LIG4-204ENST00000611712 RAD50Q92878 1312 aa10.27□□□□□ -0.77
LIG4-204ENST00000611712 BRD1O95696 1058 aa10.27□□□□□ -0.77
LIG4-204ENST00000611712 CHRNA2Q15822 529 aa10.27□□□□□ -0.77
LIG4-204ENST00000611712 NFATC2IPQ8NCF5 419 aa10.27□□□□□ -0.77
LIG4-204ENST00000611712 ZC3H13Q5T200 1668 aaKnown RBP10.27□□□□□ -0.77
LIG4-204ENST00000611712 PLEKHG1Q9ULL1 1385 aa10.27□□□□□ -0.77
LIG4-204ENST00000611712 SNRPA1P09661 255 aaKnown RBP10.26□□□□□ -0.77
LIG4-204ENST00000611712 MCM5P33992 734 aa10.26□□□□□ -0.77
LIG4-204ENST00000611712 BCL11BQ9C0K0 894 aaPredicted RBP10.26□□□□□ -0.77
LIG4-204ENST00000611712 BICC1Q9H694 974 aaKnown RBP10.26□□□□□ -0.77
LIG4-204ENST00000611712 ZKSCAN5Q9Y2L8 839 aa10.26□□□□□ -0.77
LIG4-204ENST00000611712 STK38Q15208 465 aa10.26□□□□□ -0.77
LIG4-204ENST00000611712 DDX46Q7L014 1031 aaKnown RBP10.26□□□□□ -0.77
LIG4-204ENST00000611712 TSPOAP1O95153 1857 aa10.26□□□□□ -0.77
LIG4-204ENST00000611712 CREB3L3Q68CJ9 461 aa10.26□□□□□ -0.77
LIG4-204ENST00000611712 ZNF830Q96NB3 372 aaPredicted RBP10.26□□□□□ -0.77
LIG4-204ENST00000611712 DDX21Q9NR30 783 aaKnown RBP eCLIP10.26□□□□□ -0.77
LIG4-204ENST00000611712 STAP2Q9UGK3 403 aa10.26□□□□□ -0.77
LIG4-204ENST00000611712 U3KPZ7 1027 aaPredicted RBP10.26□□□□□ -0.77
LIG4-204ENST00000611712 PPLO60437 1756 aa10.26□□□□□ -0.77
LIG4-204ENST00000611712 NEK1Q96PY6 1258 aa10.26□□□□□ -0.77
LIG4-204ENST00000611712 ORAI2Q96SN7 254 aa10.26□□□□□ -0.77
LIG4-204ENST00000611712 FRMPD1Q5SYB0 1578 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 GOLIM4O00461 696 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 DHX16O60231 1041 aaKnown RBP10.25□□□□□ -0.77
LIG4-204ENST00000611712 IFIT1P09914 478 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms